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2024

  1. Frank-Andreas Weber, J. Schoth, P. Jagemann, T. Schmidt, Marek Widera, Alexander Wilhelm, F. Meyer, Ricarda Schmithausen, Ivana Kraiselburd, S. Moebus, Dennis Schmiege, T. Wintgens, V. Linnemann, and J.-L Wolber. WBEready – Wastewater-based epidemiology and preparedness: research needs for an adaptive monitoring in the Public Health Service. Das Gesundheitswesen. 2024. [doi]
    BibTeX 
    @inproceedings{webetal,
  author = {Weber, Frank-Andreas and Schoth, J. and Jagemann, P. and Schmidt, T. and Widera, Marek and Wilhelm, Alexander and Meyer, F. and Schmithausen, Ricarda and Kraiselburd, Ivana and Moebus, S. and Schmiege, Dennis and Wintgens, T. and Linnemann, V. and Wolber, J.-L},
  year = {2024},
  month = apr,
  pages = {},
  title = {WBEready – Wastewater-based epidemiology and preparedness: research needs for an adaptive monitoring in the Public Health Service},
  volume = {86},
  journal = {Das Gesundheitswesen},
  doi = {10.1055/s-0044-1781837}
}
  2. S. Sachse, Olympia Anastasiou, Carina Elsner, R. Ross, S. Goretzki, S. Goer, R. Nagel, M. Koldehoff, Mykhailo Savin, Manuel Döhla, Nico Mutters, Alexander Thomas, Ivana Kraiselburd, F. Meyer, Ricarda Schmithausen, and Ulf Dittmer. From airport to school to hospital – the story of a rare SARS-CoV-2 virus variant import. Das Gesundheitswesen. 2024. [doi]
    BibTeX 
    @inproceedings{Sachse24,
  author = {Sachse, S. and Anastasiou, Olympia and Elsner, Carina and Ross, R. and Goretzki, S. and Goer, S. and Nagel, R. and Koldehoff, M. and Savin, Mykhailo and Döhla, Manuel and Mutters, Nico and Thomas, Alexander and Kraiselburd, Ivana and Meyer, F. and Schmithausen, Ricarda and Dittmer, Ulf},
  year = {2024},
  month = apr,
  pages = {},
  title = {From airport to school to hospital – the story of a rare SARS-CoV-2 virus variant import},
  volume = {86},
  journal = {Das Gesundheitswesen},
  doi = {10.1055/s-0044-1781946}
}
  3. Dennis Schmiege, Timo Haselhoff, Alexander Thomas, Ivana Kraiselburd, Folker Meyer, and Susanne Moebus. Small-scale wastewater-based epidemiology (WBE) for infectious diseases and antibiotic resistance: A scoping review. International Journal of Hygiene and Environmental Health. 2024. [doi] [url]
    BibTeX 
    @article{SCHMIEGE2024114379,
  title = {Small-scale wastewater-based epidemiology (WBE) for infectious diseases and antibiotic resistance: A scoping review},
  journal = {International Journal of Hygiene and Environmental Health},
  volume = {259},
  pages = {114379},
  year = {2024},
  issn = {1438-4639},
  doi = {https://doi.org/10.1016/j.ijheh.2024.114379},
  url = {https://www.sciencedirect.com/science/article/pii/S1438463924000609},
  author = {Schmiege, Dennis and Haselhoff, Timo and Thomas, Alexander and Kraiselburd, Ivana and Meyer, Folker and Moebus, Susanne},
  keywords = {Antimicrobial resistance, Building, Neighborhood, Public health, Virus, Wastewater surveillance}
}
  4. Alexander Thomas, Thomas Battenfeld, Ivana Kraiselburd, Olympia Anastasiou, Ulf Dittmer, Ann-Kathrin Dörr, Adrian Dörr, Carina Elsner, Jule Gosch, Vu Thuy Khanh Le-Trilling, Simon Magin, René Scholtysik, Pelin Yilmaz, Mirko Trilling, Lara Schöler, Johannes Köster, and Folker Meyer. UnCoVar: a reproducible and scalable workflow for transparent and robust virus variant calling and lineage assignment using SARS-CoV-2 as an example. BMC Genomics. 2024. [doi] [url]
    BibTeX 
    @article{RN5113,
  author = {Thomas, Alexander and Battenfeld, Thomas and Kraiselburd, Ivana and Anastasiou, Olympia and Dittmer, Ulf and Dörr, Ann-Kathrin and Dörr, Adrian and Elsner, Carina and Gosch, Jule and Le-Trilling, Vu Thuy Khanh and Magin, Simon and Scholtysik, René and Yilmaz, Pelin and Trilling, Mirko and Schöler, Lara and Köster, Johannes and Meyer, Folker},
  title = {UnCoVar: a reproducible and scalable workflow for transparent and robust virus variant calling and lineage assignment using SARS-CoV-2 as an example},
  journal = {BMC Genomics},
  volume = {25},
  number = {1},
  pages = {647},
  issn = {1471-2164},
  doi = {10.1186/s12864-024-10539-0},
  url = {https://doi.org/10.1186/s12864-024-10539-0},
  year = {2024},
  type = {Journal Article}
}
  5. Maxim Cherneha, Isabel Zydek, Peer Braß, Johannes Korth, Sarah Jansen, Stefan Esser, Christina B. Karsten, Folker Meyer, Ivana Kraiselburd, Ulf Dittmer, Monika Lindemann, Peter A. Horn, Oliver Witzke, Laura Thümmler, and Adalbert Krawczyk. Immunogenicity of the Monovalent Omicron XBB.1.5-Adapted BNT162b2 COVID-19 Vaccine in People Living with HIV (PLWH). Vaccines. 2024. [doi] [url]
    BibTeX 
    @article{vaccines12070785,
  author = {Cherneha, Maxim and Zydek, Isabel and Braß, Peer and Korth, Johannes and Jansen, Sarah and Esser, Stefan and Karsten, Christina B. and Meyer, Folker and Kraiselburd, Ivana and Dittmer, Ulf and Lindemann, Monika and Horn, Peter A. and Witzke, Oliver and Thümmler, Laura and Krawczyk, Adalbert},
  title = {Immunogenicity of the Monovalent Omicron XBB.1.5-Adapted BNT162b2 COVID-19 Vaccine in People Living with HIV (PLWH)},
  journal = {Vaccines},
  volume = {12},
  year = {2024},
  number = {7},
  article-number = {785},
  url = {https://www.mdpi.com/2076-393X/12/7/785},
  issn = {2076-393X},
  doi = {10.3390/vaccines12070785}
}

2023

  1. Dennis Schmiege, Ivana Kraiselburd, Timo Haselhoff, Alexander Thomas, Adrian Doerr, Jule Gosch, Jens Schoth, Burkhard Teichgräber, Susanne Moebus, and Folker Meyer. Analyzing community wastewater in sub-sewersheds for the small-scale detection of SARS-CoV-2 variants in a German metropolitan area. Science of The Total Environment. 2023. [doi] [url]
    BibTeX 
    @article{SCHMIEGE2023165458,
  title = {Analyzing community wastewater in sub-sewersheds for the small-scale detection of SARS-CoV-2 variants in a German metropolitan area},
  journal = {Science of The Total Environment},
  volume = {898},
  pages = {165458},
  year = {2023},
  issn = {0048-9697},
  doi = {https://doi.org/10.1016/j.scitotenv.2023.165458},
  url = {https://www.sciencedirect.com/science/article/pii/S0048969723040810},
  author = {Schmiege, Dennis and Kraiselburd, Ivana and Haselhoff, Timo and Thomas, Alexander and Doerr, Adrian and Gosch, Jule and Schoth, Jens and Teichgräber, Burkhard and Moebus, Susanne and Meyer, Folker},
  keywords = {COVID-19, Public health, Small-scale, Single nucleotide variants (SNVs), Wastewater surveillance, Whole genome sequencing}
}
  2. Maren Bormann, Leonie Brochhagen, Mira Alt, Mona Otte, Laura Thümmler, Lukas van de Sand, Ivana Kraiselburd, Alexander Thomas, Jule Gosch, Peer Braß, Sandra Ciesek, Marek Widera, Sebastian Dolff, Ulf Dittmer, Oliver Witzke, Folker Meyer, Monika Lindemann, Andreas Schönfeld, Hana Rohn, and Adalbert Krawczyk. Immune responses in COVID-19 patients during breakthrough infection with SARS-CoV-2 variants Delta, Omicron-BA.1 and Omicron-BA.5. Frontiers in Immunology. 2023. [doi] [url]
    BibTeX 
    @article{10.3389/fimmu.2023.1150667,
  author = {Bormann, Maren and Brochhagen, Leonie and Alt, Mira and Otte, Mona and Thümmler, Laura and van de Sand, Lukas and Kraiselburd, Ivana and Thomas, Alexander and Gosch, Jule and Braß, Peer and Ciesek, Sandra and Widera, Marek and Dolff, Sebastian and Dittmer, Ulf and Witzke, Oliver and Meyer, Folker and Lindemann, Monika and Schönfeld, Andreas and Rohn, Hana and Krawczyk, Adalbert},
  title = {Immune responses in COVID-19 patients during breakthrough infection with SARS-CoV-2 variants Delta, Omicron-BA.1 and Omicron-BA.5},
  journal = {Frontiers in Immunology},
  volume = {14},
  year = {2023},
  url = {https://www.frontiersin.org/articles/10.3389/fimmu.2023.1150667},
  doi = {10.3389/fimmu.2023.1150667},
  issn = {1664-3224}
}
  3. Martin Hartmann, Claude Herzog, Ivano Brunner, Beat Stierli, Folker Meyer, Nina Buchmann, and Beat Frey. Long-term mitigation of drought changes the functional potential and life-strategies of the forest soil microbiome involved in organic matter decomposition. Frontiers in Microbiology. 2023. [doi] [url]
    BibTeX 
    @article{10.3389/fmicb.2023.1267270,
  author = {Hartmann, Martin and Herzog, Claude and Brunner, Ivano and Stierli, Beat and Meyer, Folker and Buchmann, Nina and Frey, Beat},
  title = {Long-term mitigation of drought changes the functional potential and life-strategies of the forest soil microbiome involved in organic matter decomposition},
  journal = {Frontiers in Microbiology},
  volume = {14},
  year = {2023},
  url = {https://www.frontiersin.org/journals/microbiology/articles/10.3389/fmicb.2023.1267270},
  doi = {10.3389/fmicb.2023.1267270},
  issn = {1664-302X}
}
  4. Tom L. Stach, Guido Sieber, Manan Shah, Sophie A. Simon, André Soares, Till L. V. Bornemann, Julia Plewka, Julian Künkel, Christian Becker, Folker Meyer, Jens Boenigk, and Alexander J. Probst. Temporal disturbance of a model stream ecosystem by high microbial diversity from treated wastewater. MicrobiologyOpen. 2023. [doi] [url]
    BibTeX 
    @article{https://doi.org/10.1002/mbo3.1347,
  author = {Stach, Tom L. and Sieber, Guido and Shah, Manan and Simon, Sophie A. and Soares, André and Bornemann, Till L. V. and Plewka, Julia and Künkel, Julian and Becker, Christian and Meyer, Folker and Boenigk, Jens and Probst, Alexander J.},
  title = {Temporal disturbance of a model stream ecosystem by high microbial diversity from treated wastewater},
  journal = {MicrobiologyOpen},
  volume = {12},
  number = {2},
  pages = {e1347},
  keywords = {ARG, freshwater, mesocosm, metagenomics, microbiome, stressor},
  doi = {https://doi.org/10.1002/mbo3.1347},
  url = {https://onlinelibrary.wiley.com/doi/abs/10.1002/mbo3.1347},
  eprint = {https://onlinelibrary.wiley.com/doi/pdf/10.1002/mbo3.1347},
  year = {2023}
}

2022

  1. Sultan Imangaliyev, Jörg Schlötterer, Folker Meyer, and Christin Seifert. Diagnosis of Inflammatory Bowel Disease and Colorectal Cancer through Multi-View Stacked Generalization Applied on Gut Microbiome Data. Diagnostics. 2022. [doi]
    BibTeX 
    @article{imangaliyevDiagnosisInflammatoryBowel2022,
  title = {Diagnosis of {{Inflammatory Bowel Disease}} and {{Colorectal Cancer}} through {{Multi-View Stacked Generalization Applied}} on {{Gut Microbiome Data}}},
  author = {Imangaliyev, Sultan and Schl{\"o}tterer, J{\"o}rg and Meyer, Folker and Seifert, Christin},
  year = {2022},
  month = oct,
  journal = {Diagnostics},
  volume = {12},
  number = {10},
  pages = {2514},
  issn = {2075-4418},
  doi = {10.3390/diagnostics12102514},
  langid = {english}
}
  2. Tomislav Cernava, Daria Rybakova, François Buscot, Thomas Clavel, Alice Carolyn McHardy, Fernando Meyer, Folker Meyer, Jörg Overmann, Bärbel Stecher, Angela Sessitsch, Michael Schloter, Gabriele Berg, Paulo Arruda, Thomas Bartzanas, Tanja Kostic, Paula Iara Brennan, Bárbara Bort Biazotti, Marie-Christine Champomier-Verges, Trevor Charles, Mairead Coakley, Paul Cotter, Don Cowan, Kathleen D’Hondt, Ilario Ferrocino, Kristina Foterek, Gema Herrero-Corral, Carly Huitema, Janet Jansson, Shuang-Jiang Liu, Paula Malloy, Emmanuelle Maguin, Lidia Markiewicz, Ryan Mcclure, Andreas Moser, Jolien Roovers, Matthew Ryan, Inga Sarand, Bettina Schelkle, Annelein Meisner, Ulrich Schurr, Joseph Selvin, Effie Tsakalidou, Martin Wagner, Steve Wakelin, Wiesław Wiczkowski, Hanna Winkler, Juanjuan Xiao, Christine J. Bunthof, Rafael Soares Correa de Souza, Yolanda Sanz, Lene Lange, Hauke Smidt, and The MicrobiomeSupport Team. Metadata Harmonization–Standards Are the Key for a Better Usage of Omics Data for Integrative Microbiome Analysis. Environmental Microbiome. 2022. [doi]
    BibTeX 
    @article{cernavaMetadataHarmonizationStandards2022,
  title = {Metadata Harmonization\textendash{{Standards}} Are the Key for a Better Usage of Omics Data for Integrative Microbiome Analysis},
  author = {Cernava, Tomislav and Rybakova, Daria and Buscot, Fran{\c c}ois and Clavel, Thomas and McHardy, Alice Carolyn and Meyer, Fernando and Meyer, Folker and Overmann, J{\"o}rg and Stecher, B{\"a}rbel and Sessitsch, Angela and Schloter, Michael and Berg, Gabriele and Arruda, Paulo and Bartzanas, Thomas and Kostic, Tanja and Brennan, Paula Iara and Biazotti, B{\'a}rbara Bort and {Champomier-Verges}, Marie-Christine and Charles, Trevor and Coakley, Mairead and Cotter, Paul and Cowan, Don and D'Hondt, Kathleen and Ferrocino, Ilario and Foterek, Kristina and {Herrero-Corral}, Gema and Huitema, Carly and Jansson, Janet and Liu, Shuang-Jiang and Malloy, Paula and Maguin, Emmanuelle and Markiewicz, Lidia and Mcclure, Ryan and Moser, Andreas and Roovers, Jolien and Ryan, Matthew and Sarand, Inga and Schelkle, Bettina and Meisner, Annelein and Schurr, Ulrich and Selvin, Joseph and Tsakalidou, Effie and Wagner, Martin and Wakelin, Steve and Wiczkowski, Wies{\l}aw and Winkler, Hanna and Xiao, Juanjuan and Bunthof, Christine J. and {de Souza}, Rafael Soares Correa and Sanz, Yolanda and Lange, Lene and Smidt, Hauke and {The MicrobiomeSupport Team}},
  year = {2022},
  month = jun,
  journal = {Environmental Microbiome},
  volume = {17},
  number = {1},
  pages = {33},
  issn = {2524-6372},
  doi = {10.1186/s40793-022-00425-1}
}
  3. A. I. Tuns, T. Hartmann, S. Magin, R. C. Gonzalez, A. G. Henssen, S. Rahmann, A. Schramm, and J. Koster. Detection and Validation of Circular DNA Fragments Using Nanopore Sequencing. Front Genet. 2022. [doi] [url]
    BibTeX 
    @article{RN1743,
  author = {Tuns, A. I. and Hartmann, T. and Magin, S. and Gonzalez, R. C. and Henssen, A. G. and Rahmann, S. and Schramm, A. and Koster, J.},
  title = {Detection and Validation of Circular DNA Fragments Using Nanopore Sequencing},
  journal = {Front Genet},
  volume = {13},
  pages = {867018},
  note = {Tuns, Alicia Isabell
  Hartmann, Till
  Magin, Simon
  Gonzalez, Rocio Chamorro
  Henssen, Anton George
  Rahmann, Sven
  Schramm, Alexander
  Koster, Johannes
  eng
  Switzerland
  2022/06/18
  Front Genet. 2022 May 30;13:867018. doi: 10.3389/fgene.2022.867018. eCollection 2022.},
  keywords = {algorithm
  cancer
  circular DNA
  nanopore sequencing
  snakemake},
  issn = {1664-8021 (Print)
  1664-8021 (Linking)},
  doi = {10.3389/fgene.2022.867018},
  url = {https://www.ncbi.nlm.nih.gov/pubmed/35711922},
  year = {2022},
  type = {Journal Article}
}
  4. Manuel Döhla, Bianca Schulte, Gero Wilbring, Beate Mareike Kümmerer, Christin Döhla, Esther Sib, Enrico Richter, Patrick Frank Ottensmeyer, Alexandra Haag, Steffen Engelhart, and others. SARS-CoV-2 in environmental samples of quarantined households. Viruses. 2022. MDPI.
    BibTeX 
    @article{dohla2022sars,
  title = {SARS-CoV-2 in environmental samples of quarantined households},
  author = {D{\"o}hla, Manuel and Schulte, Bianca and Wilbring, Gero and K{\"u}mmerer, Beate Mareike and D{\"o}hla, Christin and Sib, Esther and Richter, Enrico and Ottensmeyer, Patrick Frank and Haag, Alexandra and Engelhart, Steffen and others},
  journal = {Viruses},
  volume = {14},
  year = {2022},
  publisher = {MDPI}
}
  5. Ramona Dolscheid-Pommerich, Eva Bartok, Marcel Renn, Beate M Kümmerer, Bianca Schulte, Ricarda M Schmithausen, Birgit Stoffel-Wagner, Hendrik Streeck, Sandra Saschenbrecker, Katja Steinhagen, and others. Correlation between a quantitative anti-SARS-CoV-2 IgG ELISA and neutralization activity. Journal of medical virology. 2022.
    BibTeX 
    @article{dolscheid2022correlation,
  title = {Correlation between a quantitative anti-SARS-CoV-2 IgG ELISA and neutralization activity},
  author = {Dolscheid-Pommerich, Ramona and Bartok, Eva and Renn, Marcel and K{\"u}mmerer, Beate M and Schulte, Bianca and Schmithausen, Ricarda M and Stoffel-Wagner, Birgit and Streeck, Hendrik and Saschenbrecker, Sandra and Steinhagen, Katja and others},
  journal = {Journal of medical virology},
  volume = {94},
  year = {2022}
}
  6. Mykhailo Savin, Gabriele Bierbaum, Ricarda Maria Schmithausen, Céline Heinemann, Judith Kreyenschmidt, Silvia Schmoger, Inna Akbaba, Annemarie Käsbohrer, and Jens Andre Hammerl. Slaughterhouse wastewater as a reservoir for extended-spectrum β-lactamase (ESBL)-producing, and colistin-resistant Klebsiella spp. and their impact in a “One Health” perspective. Science of The Total Environment. 2022. Elsevier.
    BibTeX 
    @article{savin2022slaughterhouse,
  title = {Slaughterhouse wastewater as a reservoir for extended-spectrum $\beta$-lactamase (ESBL)-producing, and colistin-resistant Klebsiella spp. and their impact in a “One Health” perspective},
  author = {Savin, Mykhailo and Bierbaum, Gabriele and Schmithausen, Ricarda Maria and Heinemann, C{\'e}line and Kreyenschmidt, Judith and Schmoger, Silvia and Akbaba, Inna and K{\"a}sbohrer, Annemarie and Hammerl, Jens Andre},
  journal = {Science of The Total Environment},
  volume = {804},
  year = {2022},
  publisher = {Elsevier}
}
  7. Mykhailo Savin, Gabriele Bierbaum, Nico T Mutters, Ricarda Maria Schmithausen, Judith Kreyenschmidt, Isidro Garcı́a-Meniño, Silvia Schmoger, Annemarie Käsbohrer, and Jens Andre Hammerl. Genetic characterization of carbapenem-resistant Klebsiella spp. from municipal and slaughterhouse wastewater. Antibiotics. 2022. MDPI.
    BibTeX 
    @article{savin2022genetic,
  title = {Genetic characterization of carbapenem-resistant Klebsiella spp. from municipal and slaughterhouse wastewater},
  author = {Savin, Mykhailo and Bierbaum, Gabriele and Mutters, Nico T and Schmithausen, Ricarda Maria and Kreyenschmidt, Judith and Garc{\'\i}a-Meni{\~n}o, Isidro and Schmoger, Silvia and K{\"a}sbohrer, Annemarie and Hammerl, Jens Andre},
  journal = {Antibiotics},
  volume = {11},
  year = {2022},
  publisher = {MDPI}
}
  8. Lukas Wessendorf, Enrico Richter, Bianca Schulte, Ricarda Maria Schmithausen, Martin Exner, Nils Lehmann, Martin Coenen, Christine Fuhrmann, Angelika Kellings, Anika Hüsing, and others. Dynamics, outcomes and prerequisites of the first SARS-CoV-2 superspreading event in Germany in February 2020: a cross-sectional epidemiological study. BMJ open. 2022. British Medical Journal Publishing Group.
    BibTeX 
    @article{wessendorf2022dynamics,
  title = {Dynamics, outcomes and prerequisites of the first SARS-CoV-2 superspreading event in Germany in February 2020: a cross-sectional epidemiological study},
  author = {Wessendorf, Lukas and Richter, Enrico and Schulte, Bianca and Schmithausen, Ricarda Maria and Exner, Martin and Lehmann, Nils and Coenen, Martin and Fuhrmann, Christine and Kellings, Angelika and H{\"u}sing, Anika and others},
  journal = {BMJ open},
  volume = {12},
  year = {2022},
  publisher = {British Medical Journal Publishing Group}
}
  9. Kerstin U Ludwig, Ricarda M Schmithausen, David Li, Max L Jacobs, Ronja Hollstein, Katja Blumenstock, Jana Liebing, Mikołaj Słabicki, Amir Ben-Shmuel, Ofir Israeli, and others. Author Correction: LAMP-Seq enables sensitive, multiplexed COVID-19 diagnostics using molecular barcoding. Nature Biotechnology. 2022. Nature Publishing Group.
    BibTeX 
    @article{ludwig2022author,
  title = {Author Correction: LAMP-Seq enables sensitive, multiplexed COVID-19 diagnostics using molecular barcoding},
  author = {Ludwig, Kerstin U and Schmithausen, Ricarda M and Li, David and Jacobs, Max L and Hollstein, Ronja and Blumenstock, Katja and Liebing, Jana and S{\l}abicki, Miko{\l}aj and Ben-Shmuel, Amir and Israeli, Ofir and others},
  journal = {Nature Biotechnology},
  year = {2022},
  publisher = {Nature Publishing Group}
}
  10. Philipp Carl Hackstein, Jasper Spitzer, Konstantinos Symeonidis, Helena Horvatic, Tanja Bedke, Babett Steglich, Lisa Assmus, Alexandru Odainic, Nina Kessler, Sabine Klein, and others. Suppression of systemic T cell immunity to viral infection during liver injury is prevented by inhibition of interferon and IL-10 signaling. bioRxiv. 2022. Cold Spring Harbor Laboratory.
    BibTeX 
    @article{hackstein2022suppression,
  title = {Suppression of systemic T cell immunity to viral infection during liver injury is prevented by inhibition of interferon and IL-10 signaling},
  author = {Hackstein, Philipp Carl and Spitzer, Jasper and Symeonidis, Konstantinos and Horvatic, Helena and Bedke, Tanja and Steglich, Babett and Assmus, Lisa and Odainic, Alexandru and Kessler, Nina and Klein, Sabine and others},
  journal = {bioRxiv},
  year = {2022},
  publisher = {Cold Spring Harbor Laboratory}
}
  11. Kerstin U Ludwig, Ricarda M Schmithausen, David Li, Max L Jacobs, Ronja Hollstein, Katja Blumenstock, Jana Liebing, Mikolaj Slabicki, Amir Ben-Shmuel, Ofir Israeli, and others. LAMP-Seq enables sensitive, multiplexed COVID-19 diagnostics using molecular barcoding (vol 39, pg 1556, 2021). NATURE BIOTECHNOLOGY. 2022.
    BibTeX 
    @article{ludwig2022lamp,
  title = {LAMP-Seq enables sensitive, multiplexed COVID-19 diagnostics using molecular barcoding (vol 39, pg 1556, 2021)},
  author = {Ludwig, Kerstin U and Schmithausen, Ricarda M and Li, David and Jacobs, Max L and Hollstein, Ronja and Blumenstock, Katja and Liebing, Jana and Slabicki, Mikolaj and Ben-Shmuel, Amir and Israeli, Ofir and others},
  journal = {NATURE BIOTECHNOLOGY},
  year = {2022}
}
  12. Vu Thuy Khanh Le-Trilling, Denise Mennerich, Corinna Schuler, Roman Sakson, Julia K. Lill, Siva Swapna Kasarla, Dominik Kopczynski, Stefan Loroch, Yulia Flores-Martinez, Benjamin Katschinski, Kerstin Wohlgemuth, Matthias Gunzer, Folker Meyer, Prasad Phapale, Ulf Dittmer, Albert Sickmann, and Mirko Trilling. Identification of herbal teas and their compounds eliciting antiviral activity against SARS-CoV-2 in vitro. BMC Biology. 2022. [doi] [url]
    BibTeX 
    @article{le2022identification,
  title = {Identification of herbal teas and their compounds eliciting antiviral activity against SARS-CoV-2 in vitro},
  author = {Le-Trilling, Vu Thuy Khanh and Mennerich, Denise and Schuler, Corinna and Sakson, Roman and Lill, Julia K. and Kasarla, Siva Swapna and Kopczynski, Dominik and Loroch, Stefan and Flores-Martinez, Yulia and Katschinski, Benjamin and Wohlgemuth, Kerstin and Gunzer, Matthias and Meyer, Folker and Phapale, Prasad and Dittmer, Ulf and Sickmann, Albert and Trilling, Mirko},
  journal = {BMC Biology},
  volume = {20},
  number = {264},
  year = {2022},
  doi = {https://doi.org/10.1186/s12915-022-01468-z},
  url = {https://www.sciencedirect.com/science/article/pii/S0048969723040810}
}
  13. Ashraf Mahgoub, Paul C Wood, Subrata Mitra, Folker Meyer, Somali Chaterji, and Saurabh Bagchi. IRIS: Online Reconfiguration of Distributed NoSQL Databases for Dynamic Workloads. 2022.
    BibTeX 
    @article{mahgoub2022iris,
  title = {IRIS: Online Reconfiguration of Distributed NoSQL Databases for Dynamic Workloads},
  author = {Mahgoub, Ashraf and Wood, Paul C and Mitra, Subrata and Meyer, Folker and Chaterji, Somali and Bagchi, Saurabh},
  year = {2022}
}

2021

  1. S. Magin, P. K. Meher, and G. Iliakis. Nucleoside Analogs Radiosensitize G0 Cells by Activating DNA End Resection and Alternative End-Joining. Radiat Res. 2021. [doi] [url]
    BibTeX 
    @article{RN1742,
  author = {Magin, S. and Meher, P. K. and Iliakis, G.},
  title = {Nucleoside Analogs Radiosensitize G0 Cells by Activating DNA End Resection and Alternative End-Joining},
  journal = {Radiat Res},
  volume = {195},
  number = {5},
  pages = {412-426},
  note = {Magin, Simon
  Meher, Prabodha Kumar
  Iliakis, George
  eng
  Research Support, Non-U.S. Gov't
  2021/03/24
  Radiat Res. 2021 May 1;195(5):412-426. doi: 10.1667/RADE-20-00195.1.},
  keywords = {Animals
  Cell Line
  Cell Proliferation/drug effects/genetics/radiation effects
  DNA Breaks, Double-Stranded/drug effects/radiation effects
  DNA End-Joining Repair/*drug effects/radiation effects
  Dose-Response Relationship, Radiation
  Humans
  Mice
  Nucleosides/*analogs & derivatives/*pharmacology
  Radiation-Sensitizing Agents/*chemistry/*pharmacology
  Resting Phase, Cell Cycle/drug effects/*genetics/radiation effects
  Tumor Suppressor p53-Binding Protein 1/metabolism},
  issn = {1938-5404 (Electronic)
  0033-7587 (Linking)},
  doi = {10.1667/RADE-20-00195.1},
  url = {https://www.ncbi.nlm.nih.gov/pubmed/33755161},
  year = {2021},
  type = {Journal Article}
}
  2. Christiane Schreiber, Nicole Zacharias, Sarah M Essert, Felix Wasser, Heike Müller, Esther Sib, Tabea Precht, Marijo Parcina, Gabriele Bierbaum, Ricarda M Schmithausen, and others. Clinically relevant antibiotic-resistant bacteria in aquatic environments–An optimized culture-based approach. Science of The Total Environment. 2021. Elsevier.
    BibTeX 
    @article{schreiber2021clinically,
  title = {Clinically relevant antibiotic-resistant bacteria in aquatic environments--An optimized culture-based approach},
  author = {Schreiber, Christiane and Zacharias, Nicole and Essert, Sarah M and Wasser, Felix and M{\"u}ller, Heike and Sib, Esther and Precht, Tabea and Parcina, Marijo and Bierbaum, Gabriele and Schmithausen, Ricarda M and others},
  journal = {Science of The Total Environment},
  volume = {750},
  year = {2021},
  publisher = {Elsevier}
}
  3. Mykhailo Savin, Gabriele Bierbaum, Judith Kreyenschmidt, Ricarda Maria Schmithausen, Esther Sib, Silvia Schmoger, Annemarie Käsbohrer, and Jens Andre Hammerl. Clinically relevant Escherichia coli isolates from process waters and wastewater of poultry and pig slaughterhouses in Germany. Microorganisms. 2021. MDPI.
    BibTeX 
    @article{savin2021clinically,
  title = {Clinically relevant Escherichia coli isolates from process waters and wastewater of poultry and pig slaughterhouses in Germany},
  author = {Savin, Mykhailo and Bierbaum, Gabriele and Kreyenschmidt, Judith and Schmithausen, Ricarda Maria and Sib, Esther and Schmoger, Silvia and K{\"a}sbohrer, Annemarie and Hammerl, Jens Andre},
  journal = {Microorganisms},
  volume = {9},
  year = {2021},
  publisher = {MDPI}
}
  4. Enrico Richter, Doaa Al Arashi, Bianca Schulte, Christian Bode, Benjamin Marx, Souhaib Aldabbagh, Celina Schlüter, Beate Mareike Kümmerer, Johannes Oldenburg, Markus B Funk, and others. Detectable SARS-CoV-2 RNAemia in critically Ill patients, but not in mild and asymptomatic infections. Transfusion Medicine and Hemotherapy. 2021. Karger Publishers.
    BibTeX 
    @article{richter2021detectable,
  title = {Detectable SARS-CoV-2 RNAemia in critically Ill patients, but not in mild and asymptomatic infections},
  author = {Richter, Enrico and Al Arashi, Doaa and Schulte, Bianca and Bode, Christian and Marx, Benjamin and Aldabbagh, Souhaib and Schl{\"u}ter, Celina and K{\"u}mmerer, Beate Mareike and Oldenburg, Johannes and Funk, Markus B and others},
  journal = {Transfusion Medicine and Hemotherapy},
  volume = {48},
  year = {2021},
  publisher = {Karger Publishers}
}
  5. Kerstin U Ludwig, Ricarda M Schmithausen, David Li, Max L Jacobs, Ronja Hollstein, Katja Blumenstock, Jana Liebing, Mikołaj Słabicki, Amir Ben-Shmuel, Ofir Israeli, and others. LAMP-Seq enables sensitive, multiplexed COVID-19 diagnostics using molecular barcoding. Nature Biotechnology. 2021. Nature Publishing Group.
    BibTeX 
    @article{ludwig2021lamp,
  title = {LAMP-Seq enables sensitive, multiplexed COVID-19 diagnostics using molecular barcoding},
  author = {Ludwig, Kerstin U and Schmithausen, Ricarda M and Li, David and Jacobs, Max L and Hollstein, Ronja and Blumenstock, Katja and Liebing, Jana and S{\l}abicki, Miko{\l}aj and Ben-Shmuel, Amir and Israeli, Ofir and others},
  journal = {Nature Biotechnology},
  volume = {39},
  year = {2021},
  publisher = {Nature Publishing Group}
}
  6. Martin Exner, Sanjay Bhattacharya, Jürgen Gebel, Peter Goroncy-Bermes, Philippe Hartemann, Peter Heeg, Carola Ilschner, Axel Kramer, Moi Lin Ling, Wolfgang Merkens, and others. Reply to the letter to the editor by R. Papke. GMS Hygiene and Infection Control. 2021. German Medical Science.
    BibTeX 
    @article{exner2021reply,
  title = {Reply to the letter to the editor by R. Papke},
  author = {Exner, Martin and Bhattacharya, Sanjay and Gebel, J{\"u}rgen and Goroncy-Bermes, Peter and Hartemann, Philippe and Heeg, Peter and Ilschner, Carola and Kramer, Axel and Ling, Moi Lin and Merkens, Wolfgang and others},
  journal = {GMS Hygiene and Infection Control},
  volume = {16},
  year = {2021},
  publisher = {German Medical Science}
}
  7. Mykhailo Savin, Johannes Alexander, Gabriele Bierbaum, Jens Andre Hammerl, Norman Hembach, Thomas Schwartz, Ricarda Maria Schmithausen, Esther Sib, Alexander Voigt, and Judith Kreyenschmidt. Antibiotic-resistant bacteria, antibiotic resistance genes, and antibiotic residues in wastewater from a poultry slaughterhouse after conventional and advanced treatments. Scientific Reports. 2021. Nature Publishing Group.
    BibTeX 
    @article{savin2021antibiotic,
  title = {Antibiotic-resistant bacteria, antibiotic resistance genes, and antibiotic residues in wastewater from a poultry slaughterhouse after conventional and advanced treatments},
  author = {Savin, Mykhailo and Alexander, Johannes and Bierbaum, Gabriele and Hammerl, Jens Andre and Hembach, Norman and Schwartz, Thomas and Schmithausen, Ricarda Maria and Sib, Esther and Voigt, Alexander and Kreyenschmidt, Judith},
  journal = {Scientific Reports},
  volume = {11},
  year = {2021},
  publisher = {Nature Publishing Group}
}
  8. Lukas Wessendorf, Enrico Richter, Bianca Schulte, Ricarda Maria Schmithausen, Martin Exner, Nils Lehmann, Martin Coenen, Christine Fuhrmann, Angelika Kellings, Anika Hüsing, and others. Analysis of the Dynamics, Outcome, and Prerequisites of the first German SARS-CoV-2 Superspreading Event. medRxiv. 2021. Cold Spring Harbor Laboratory Press.
    BibTeX 
    @article{wessendorf2021analysis,
  title = {Analysis of the Dynamics, Outcome, and Prerequisites of the first German SARS-CoV-2 Superspreading Event},
  author = {Wessendorf, Lukas and Richter, Enrico and Schulte, Bianca and Schmithausen, Ricarda Maria and Exner, Martin and Lehmann, Nils and Coenen, Martin and Fuhrmann, Christine and Kellings, Angelika and H{\"u}sing, Anika and others},
  journal = {medRxiv},
  year = {2021},
  publisher = {Cold Spring Harbor Laboratory Press}
}
  9. Hendrik F. R. Schmidt, Jörg Schlötterer, Marcel Bargull, Enrico Nasca, Ryan Aydelott, Christin Seifert, and Folker Meyer. Towards a Trustworthy, Secure and Reliable Enclave for Machine Learning in a Hospital Setting: The Essen Medical Computing Platform (EMCP). Third IEEE International Conference on Cognitive Machine Intelligence, CogMI 2021, Atlanta, GA, USA, December 13-15, 2021. 2021. IEEE. [doi]
    BibTeX 
    @inproceedings{schmidt_towards_2021,
  title = {Towards a {Trustworthy}, {Secure} and {Reliable} {Enclave} for {Machine} {Learning} in a {Hospital} {Setting}: {The} {Essen} {Medical} {Computing} {Platform} ({EMCP})},
  doi = {10.1109/CogMI52975.2021.00023},
  booktitle = {Third {IEEE} {International} {Conference} on {Cognitive} {Machine} {Intelligence}, {CogMI} 2021, {Atlanta}, {GA}, {USA}, {December} 13-15, 2021},
  publisher = {IEEE},
  author = {Schmidt, Hendrik F. R. and Schlötterer, Jörg and Bargull, Marcel and Nasca, Enrico and Aydelott, Ryan and Seifert, Christin and Meyer, Folker},
  year = {2021}
}

2020

  1. S. Magin, A. Georgoulis, K. Papadimitriou, G. Iliakis, and C. E. Vorgias. Complete Genome Sequence of the Deep-Sea Bacterium Moritella marina MP-1 (ATCC 15381). Microbiol Resour Announc. 2020. [doi] [url]
    BibTeX 
    @article{RN1741,
  author = {Magin, S. and Georgoulis, A. and Papadimitriou, K. and Iliakis, G. and Vorgias, C. E.},
  title = {Complete Genome Sequence of the Deep-Sea Bacterium Moritella marina MP-1 (ATCC 15381)},
  journal = {Microbiol Resour Announc},
  volume = {9},
  number = {4},
  note = {Magin, Simon
  Georgoulis, Anastasios
  Papadimitriou, Konstantinos
  Iliakis, George
  Vorgias, Constantinos E
  eng
  2020/01/25
  Microbiol Resour Announc. 2020 Jan 23;9(4). pii: 9/4/e01321-19. doi: 10.1128/MRA.01321-19.},
  issn = {2576-098X (Electronic)
  2576-098X (Linking)},
  doi = {10.1128/MRA.01321-19},
  url = {https://www.ncbi.nlm.nih.gov/pubmed/31974151},
  year = {2020},
  type = {Journal Article}
}
  2. Laura Moyano, Analía Carrau, Silvana Petrocelli, Ivana Kraiselburd, Wolfgang Gärtner, and Elena G Orellano. Bacteriophytochromes from Pseudomonas syringae pv. tomato DC3000 modulate the early stages of plant colonization during bacterial speck disease. European Journal of Plant Pathology. 2020.
    BibTeX 
    @article{Moyano2020BacteriophytochromesFP,
  title = {Bacteriophytochromes from Pseudomonas syringae pv. tomato DC3000 modulate the early stages of plant colonization during bacterial speck disease},
  author = {Moyano, Laura and Carrau, Anal{\'i}a and Petrocelli, Silvana and Kraiselburd, Ivana and G{\"a}rtner, Wolfgang and Orellano, Elena G},
  journal = {European Journal of Plant Pathology},
  year = {2020},
  volume = {156},
  pages = {695 - 712}
}
  3. Manuel Döhla, Esther Sib, Barbara Dericks, Susanne Grobe, Katja Behringer, Monika Frechen, Katharina Simon, Harald Färber, Franziska Lenz, Marijo Parcina, and others. Assessment of the prevalence of antibiotic-resistant bacteria and the concentration of antibiotics in EU bathing waters in western Germany. Exposure and Health. 2020. Springer Netherlands.
    BibTeX 
    @article{dohla2020assessment,
  title = {Assessment of the prevalence of antibiotic-resistant bacteria and the concentration of antibiotics in EU bathing waters in western Germany},
  author = {D{\"o}hla, Manuel and Sib, Esther and Dericks, Barbara and Grobe, Susanne and Behringer, Katja and Frechen, Monika and Simon, Katharina and F{\"a}rber, Harald and Lenz, Franziska and Parcina, Marijo and others},
  journal = {Exposure and Health},
  volume = {12},
  year = {2020},
  publisher = {Springer Netherlands}
}
  4. AM Voigt, N Zacharias, C Timm, F Wasser, E Sib, D Skutlarek, M Parcina, RM Schmithausen, T Schwartz, N Hembach, and others. Association between antibiotic residues, antibiotic resistant bacteria and antibiotic resistance genes in anthropogenic wastewater–An evaluation of clinical influences. Chemosphere. 2020. Pergamon.
    BibTeX 
    @article{voigt2020association,
  title = {Association between antibiotic residues, antibiotic resistant bacteria and antibiotic resistance genes in anthropogenic wastewater--An evaluation of clinical influences},
  author = {Voigt, AM and Zacharias, N and Timm, C and Wasser, F and Sib, E and Skutlarek, D and Parcina, M and Schmithausen, RM and Schwartz, T and Hembach, N and others},
  journal = {Chemosphere},
  volume = {241},
  year = {2020},
  publisher = {Pergamon}
}
  5. AM Voigt, P Ciorba, M Döhla, M Exner, C Felder, F Lenz-Plet, E Sib, D Skutlarek, RM Schmithausen, and HA Faerber. The investigation of antibiotic residues, antibiotic resistance genes and antibiotic-resistant organisms in a drinking water reservoir system in Germany. International journal of hygiene and environmental health. 2020. Urban & Fischer.
    BibTeX 
    @article{voigt2020investigation,
  title = {The investigation of antibiotic residues, antibiotic resistance genes and antibiotic-resistant organisms in a drinking water reservoir system in Germany},
  author = {Voigt, AM and Ciorba, P and D{\"o}hla, M and Exner, M and Felder, C and Lenz-Plet, F and Sib, E and Skutlarek, D and Schmithausen, RM and Faerber, HA},
  journal = {International journal of hygiene and environmental health},
  volume = {224},
  year = {2020},
  publisher = {Urban \& Fischer}
}
  6. Daniel Philipp Exner, Meike Elisabeth Stoffels, Martin Exner, Steffen Engelhart, Jörg Christoph Kalff, and Ricarda Maria Schmithausen. Questionnaire based evaluation of the motivation of surgically treated patients to participate in preventative hygiene measures. GMS Hygiene and Infection Control. 2020. German Medical Science.
    BibTeX 
    @article{exner2020questionnaire,
  title = {Questionnaire based evaluation of the motivation of surgically treated patients to participate in preventative hygiene measures},
  author = {Exner, Daniel Philipp and Stoffels, Meike Elisabeth and Exner, Martin and Engelhart, Steffen and Kalff, J{\"o}rg Christoph and Schmithausen, Ricarda Maria},
  journal = {GMS Hygiene and Infection Control},
  volume = {15},
  year = {2020},
  publisher = {German Medical Science}
}
  7. M Döhla, C Boesecke, B Schulte, C Diegmann, E Sib, E Richter, M Eschbach-Bludau, S Aldabbagh, B Marx, A-M Eis-Hübinger, and others. Rapid point-of-care testing for SARS-CoV-2 in a community screening setting shows low sensitivity. Public health. 2020. WB Saunders.
    BibTeX 
    @article{dohla2020rapid,
  title = {Rapid point-of-care testing for SARS-CoV-2 in a community screening setting shows low sensitivity},
  author = {D{\"o}hla, M and Boesecke, C and Schulte, B and Diegmann, C and Sib, E and Richter, E and Eschbach-Bludau, M and Aldabbagh, S and Marx, B and Eis-H{\"u}binger, A-M and others},
  journal = {Public health},
  volume = {182},
  year = {2020},
  publisher = {WB Saunders}
}
  8. Hendrik Streeck, Bianca Schulte, Beate M Kümmerer, Enrico Richter, Tobias Höller, Christine Fuhrmann, Eva Bartok, Ramona Dolscheid, Moritz Berger, Lukas Wessendorf, and others. Infection fatality rate of SARS-CoV-2 infection in a German community with a super-spreading event. medrxiv. 2020. Cold Spring Harbor Laboratory Press.
    BibTeX 
    @article{streeck2020infection,
  title = {Infection fatality rate of SARS-CoV-2 infection in a German community with a super-spreading event},
  author = {Streeck, Hendrik and Schulte, Bianca and K{\"u}mmerer, Beate M and Richter, Enrico and H{\"o}ller, Tobias and Fuhrmann, Christine and Bartok, Eva and Dolscheid, Ramona and Berger, Moritz and Wessendorf, Lukas and others},
  journal = {medrxiv},
  year = {2020},
  publisher = {Cold Spring Harbor Laboratory Press}
}
  9. Ricarda M Schmithausen, Manuel Döhla, Heidrun Schö\betaler, Christin Diegmann, Bianca Schulte, Enrico Richter, Anna-Maria Eis-Hübinger, and Hendrik Streeck. Characteristic temporary loss of taste and olfactory senses in SARS-CoV-2-positive-individuals with mild symptoms. Pathogens and Immunity. 2020. Faculty at Case Western Reserve University School of Medicine.
    BibTeX 
    @article{schmithausen2020characteristic,
  title = {Characteristic temporary loss of taste and olfactory senses in SARS-CoV-2-positive-individuals with mild symptoms},
  author = {Schmithausen, Ricarda M and D{\"o}hla, Manuel and Sch{\"o}$\beta$ler, Heidrun and Diegmann, Christin and Schulte, Bianca and Richter, Enrico and Eis-H{\"u}binger, Anna-Maria and Streeck, Hendrik},
  journal = {Pathogens and Immunity},
  volume = {5},
  year = {2020},
  publisher = {Faculty at Case Western Reserve University School of Medicine}
}
  10. Jonathan L Schmid-Burgk, Ricarda M Schmithausen, David Li, Ronja Hollstein, Amir Ben-Shmuel, Ofir Israeli, Shay Weiss, Nir Paran, Gero Wilbring, Jana Liebing, and others. LAMP-Seq: population-scale COVID-19 diagnostics using combinatorial barcoding. biorxiv. 2020. Cold Spring Harbor Laboratory.
    BibTeX 
    @article{schmid2020lamp,
  title = {LAMP-Seq: population-scale COVID-19 diagnostics using combinatorial barcoding},
  author = {Schmid-Burgk, Jonathan L and Schmithausen, Ricarda M and Li, David and Hollstein, Ronja and Ben-Shmuel, Amir and Israeli, Ofir and Weiss, Shay and Paran, Nir and Wilbring, Gero and Liebing, Jana and others},
  journal = {biorxiv},
  year = {2020},
  publisher = {Cold Spring Harbor Laboratory}
}
  11. Esther Sib, Franziska Lenz-Plet, Vanessa Barabasch, Ursula Klanke, Mykhailo Savin, Norman Hembach, Anna Schallenberg, Katja Kehl, Cathrin Albert, Mike Gajdiss, and others. Bacteria isolated from hospital, municipal and slaughterhouse wastewaters show characteristic, different resistance profiles. Science of The Total Environment. 2020. Elsevier.
    BibTeX 
    @article{sib2020bacteria,
  title = {Bacteria isolated from hospital, municipal and slaughterhouse wastewaters show characteristic, different resistance profiles},
  author = {Sib, Esther and Lenz-Plet, Franziska and Barabasch, Vanessa and Klanke, Ursula and Savin, Mykhailo and Hembach, Norman and Schallenberg, Anna and Kehl, Katja and Albert, Cathrin and Gajdiss, Mike and others},
  journal = {Science of The Total Environment},
  volume = {746},
  year = {2020},
  publisher = {Elsevier}
}
  12. Céline Heinemann, Caroline D Leubner, Mykhailo Savin, Esther Sib, Ricarda M Schmithausen, and Julia Steinhoff-Wagner. Research note: tracing pathways of entry and persistence of facultative pathogenic and antibiotic-resistant bacteria in a commercial broiler farm with substantial health problems. Poultry science. 2020. Elsevier.
    BibTeX 
    @article{heinemann2020research,
  title = {Research note: tracing pathways of entry and persistence of facultative pathogenic and antibiotic-resistant bacteria in a commercial broiler farm with substantial health problems},
  author = {Heinemann, C{\'e}line and Leubner, Caroline D and Savin, Mykhailo and Sib, Esther and Schmithausen, Ricarda M and Steinhoff-Wagner, Julia},
  journal = {Poultry science},
  volume = {99},
  year = {2020},
  publisher = {Elsevier}
}
  13. Hendrik Streeck, Bianca Schulte, Beate M Kümmerer, Enrico Richter, Tobias Höller, Christine Fuhrmann, Eva Bartok, Ramona Dolscheid, Moritz Berger, Lukas Wessendorf, and others. Infection fatality rate of SARS-CoV-2 infection in a German community with a super-spreading event. 2020. Nat Commun. 2020.
    BibTeX 
    @article{streeck2020infectioo,
  title = {Infection fatality rate of SARS-CoV-2 infection in a German community with a super-spreading event. 2020},
  author = {Streeck, Hendrik and Schulte, Bianca and K{\"u}mmerer, Beate M and Richter, Enrico and H{\"o}ller, Tobias and Fuhrmann, Christine and Bartok, Eva and Dolscheid, Ramona and Berger, Moritz and Wessendorf, Lukas and others},
  journal = {Nat Commun},
  volume = {11},
  year = {2020}
}
  14. Mykhailo Savin, Gabriele Bierbaum, Khald Blau, Marijo Parcina, Esther Sib, Kornelia Smalla, Ricarda Schmithausen, Céline Heinemann, Jens A Hammerl, and Judith Kreyenschmidt. Colistin-resistant enterobacteriaceae isolated from process waters and wastewater from German poultry and pig slaughterhouses. Frontiers in Microbiology. 2020. Frontiers Media SA.
    BibTeX 
    @article{savin2020colistin,
  title = {Colistin-resistant enterobacteriaceae isolated from process waters and wastewater from German poultry and pig slaughterhouses},
  author = {Savin, Mykhailo and Bierbaum, Gabriele and Blau, Khald and Parcina, Marijo and Sib, Esther and Smalla, Kornelia and Schmithausen, Ricarda and Heinemann, C{\'e}line and Hammerl, Jens A and Kreyenschmidt, Judith},
  journal = {Frontiers in Microbiology},
  volume = {11},
  year = {2020},
  publisher = {Frontiers Media SA}
}
  15. Hendrik Streeck, Bianca Schulte, Beate M Kümmerer, Enrico Richter, Tobias Höller, Christine Fuhrmann, Eva Bartok, Ramona Dolscheid-Pommerich, Moritz Berger, Lukas Wessendorf, and others. Infection fatality rate of SARS-CoV2 in a super-spreading event in Germany. Nature communications. 2020. Nature Publishing Group.
    BibTeX 
    @article{streeck2020infectiop,
  title = {Infection fatality rate of SARS-CoV2 in a super-spreading event in Germany},
  author = {Streeck, Hendrik and Schulte, Bianca and K{\"u}mmerer, Beate M and Richter, Enrico and H{\"o}ller, Tobias and Fuhrmann, Christine and Bartok, Eva and Dolscheid-Pommerich, Ramona and Berger, Moritz and Wessendorf, Lukas and others},
  journal = {Nature communications},
  volume = {11},
  year = {2020},
  publisher = {Nature Publishing Group}
}
  16. Martin Exner, Sanjay Bhattacharya, Jürgen Gebel, Peter Goroncy-Bermes, Philippe Hartemann, Peter Heeg, Carola Ilschner, Axel Kramer, Moi Lin Ling, Wolfgang Merkens, and others. Chemical disinfection in healthcare settings: critical aspects for the development of global strategies. GMS hygiene and infection control. 2020. German Medical Science.
    BibTeX 
    @article{exner2020chemical,
  title = {Chemical disinfection in healthcare settings: critical aspects for the development of global strategies},
  author = {Exner, Martin and Bhattacharya, Sanjay and Gebel, J{\"u}rgen and Goroncy-Bermes, Peter and Hartemann, Philippe and Heeg, Peter and Ilschner, Carola and Kramer, Axel and Ling, Moi Lin and Merkens, Wolfgang and others},
  journal = {GMS hygiene and infection control},
  volume = {15},
  year = {2020},
  publisher = {German Medical Science}
}
  17. Hendrik Streeck, Bianca Schulte, B Kuemmerer, Enrico Richter, Tobias Höller, Christine Fuhrmann, Eva Bartok, R Dolscheid, M Berger, L Wessendorf, and others. Infection fatality rate of SARS-CoV-2 infection in a German community with a super-spreading event. medRxiv. Preprint posted online June. 2020.
    BibTeX 
    @article{streeck2020infectioq,
  title = {Infection fatality rate of SARS-CoV-2 infection in a German community with a super-spreading event. medRxiv},
  author = {Streeck, Hendrik and Schulte, Bianca and Kuemmerer, B and Richter, Enrico and H{\"o}ller, Tobias and Fuhrmann, Christine and Bartok, Eva and Dolscheid, R and Berger, M and Wessendorf, L and others},
  journal = {Preprint posted online June},
  volume = {2},
  year = {2020}
}
  18. Michael Schloter, Folker Meyer, and Gabriele Berg. Mikrobiome—Forschung zwischen Theorie und praktischer Anwendung. BIOspektrum. 2020.
    BibTeX 
    @article{schloter_mikrobiomeforschung_2020,
  title = {Mikrobiome—{Forschung} zwischen {Theorie} und praktischer {Anwendung}},
  volume = {26},
  journal = {BIOspektrum},
  author = {Schloter, Michael and Meyer, Folker and Berg, Gabriele},
  year = {2020},
  note = {Publisher: Springer Berlin Heidelberg}
}
  19. L. M. Schriml, M. Chuvochina, N. Davies, E. A. Eloe-Fadrosh, R. D. Finn, P. Hugenholtz, C. I. Hunter, B. L. Hurwitz, N. C. Kyrpides, Folker Meyer, I. K. Mizrachi, S. A. Sansone, G. Sutton, S. Tighe, and R. Walls. COVID-19 pandemic reveals the peril of ignoring metadata standards. Sci Data. 2020. [doi] [url]
    BibTeX 
    @article{schriml_covid-19_2020-1,
  title = {{COVID}-19 pandemic reveals the peril of ignoring metadata standards},
  volume = {7},
  url = {https://www.ncbi.nlm.nih.gov/pubmed/32561801},
  doi = {10.1038/s41597-020-0524-5},
  journal = {Sci Data},
  author = {Schriml, L. M. and Chuvochina, M. and Davies, N. and Eloe-Fadrosh, E. A. and Finn, R. D. and Hugenholtz, P. and Hunter, C. I. and Hurwitz, B. L. and Kyrpides, N. C. and Meyer, Folker and Mizrachi, I. K. and Sansone, S. A. and Sutton, G. and Tighe, S. and Walls, R.},
  year = {2020},
  note = {Type: Journal Article}
}

2019

  1. A. Soni, T. Murmann-Konda, S. Magin, and G. Iliakis. A method for the cell-cycle-specific analysis of radiation-induced chromosome aberrations and breaks. Mutat Res. 2019. [doi] [url]
    BibTeX 
    @article{RN1740,
  author = {Soni, A. and Murmann-Konda, T. and Magin, S. and Iliakis, G.},
  title = {A method for the cell-cycle-specific analysis of radiation-induced chromosome aberrations and breaks},
  journal = {Mutat Res},
  volume = {815},
  pages = {10-19},
  note = {Soni, Aashish
  Murmann-Konda, Tamara
  Magin, Simon
  Iliakis, George
  eng
  Research Support, Non-U.S. Gov't
  Netherlands
  2019/04/19
  Mutat Res. 2019 May;815:10-19. doi: 10.1016/j.mrfmmm.2019.04.001. Epub 2019 Apr 6.},
  keywords = {Animals
  CHO Cells
  Cell Line
  Cell Line, Tumor
  Chromosome Aberrations/*radiation effects
  Chromosome Breakage/drug effects
  Chromosomes/*genetics/radiation effects
  Cricetulus
  DNA Repair/genetics/radiation effects
  G2 Phase/genetics/radiation effects
  HCT116 Cells
  Humans
  Kinetics
  Metaphase/*genetics/*radiation effects
  Radiation, Ionizing
  S Phase/genetics/radiation effects
  *Cell cycle
  *Chromosomal aberrations
  *DNA double strand breaks repair
  *EdU-ClickIT(R)
  *G(2) radiosensitivity assay},
  issn = {1873-135X (Electronic)
  0027-5107 (Linking)},
  doi = {10.1016/j.mrfmmm.2019.04.001},
  url = {https://www.ncbi.nlm.nih.gov/pubmed/30999232},
  year = {2019},
  type = {Journal Article}
}
  2. Ivana Kraiselburd, Thomas Brüls, Geronimo Heilmann, Farnusch Kaschani, Markus Kaiser, and Rainer U. Meckenstock. Metabolic reconstruction of the genome of candidate Desulfatiglans TRIP_1 and identification of key candidate enzymes for anaerobic phenanthrene degradation. Environmental Microbiology. 2019.
    BibTeX 
    @article{Kraiselburd2019MetabolicRO,
  title = {Metabolic reconstruction of the genome of candidate Desulfatiglans TRIP\_1 and identification of key candidate enzymes for anaerobic phenanthrene degradation},
  author = {Kraiselburd, Ivana and Br{\"u}ls, Thomas and Heilmann, Geronimo and Kaschani, Farnusch and Kaiser, Markus and Meckenstock, Rainer U.},
  journal = {Environmental Microbiology},
  year = {2019},
  volume = {21},
  pages = {1267 - 1286}
}
  3. AM Voigt, HA Faerber, G Wilbring, D Skutlarek, C Felder, R Mahn, D Wolf, P Brossart, T Hornung, S Engelhart, and others. The occurrence of antimicrobial substances in toilet, sink and shower drainpipes of clinical units: a neglected source of antibiotic residues. International journal of hygiene and environmental health. 2019. Urban & Fischer.
    BibTeX 
    @article{voigt2019occurrence,
  title = {The occurrence of antimicrobial substances in toilet, sink and shower drainpipes of clinical units: a neglected source of antibiotic residues},
  author = {Voigt, AM and Faerber, HA and Wilbring, G and Skutlarek, D and Felder, C and Mahn, R and Wolf, D and Brossart, P and Hornung, T and Engelhart, S and others},
  journal = {International journal of hygiene and environmental health},
  volume = {222},
  year = {2019},
  publisher = {Urban \& Fischer}
}
  4. E Sib, AM Voigt, G Wilbring, C Schreiber, HA Faerber, D Skutlarek, M Parcina, R Mahn, D Wolf, P Brossart, and others. Antibiotic resistant bacteria and resistance genes in biofilms in clinical wastewater networks. International journal of hygiene and environmental health. 2019. Urban & Fischer.
    BibTeX 
    @article{sib2019antibiotic,
  title = {Antibiotic resistant bacteria and resistance genes in biofilms in clinical wastewater networks},
  author = {Sib, E and Voigt, AM and Wilbring, G and Schreiber, C and Faerber, HA and Skutlarek, D and Parcina, M and Mahn, R and Wolf, D and Brossart, P and others},
  journal = {International journal of hygiene and environmental health},
  volume = {222},
  year = {2019},
  publisher = {Urban \& Fischer}
}
  5. Dennis Niebel, Thorsten Hornung, Ricarda Schmithausen, Hanna Rothe, Marijo Parcina, Jörg Wenzel, Martin Exner, and Thomas Bieber. Faziale Nekrose durch Orthopoxviren. Der Hautarzt. 2019. Springer Medizin.
    BibTeX 
    @article{niebel2019faziale,
  title = {Faziale Nekrose durch Orthopoxviren},
  author = {Niebel, Dennis and Hornung, Thorsten and Schmithausen, Ricarda and Rothe, Hanna and Parcina, Marijo and Wenzel, J{\"o}rg and Exner, Martin and Bieber, Thomas},
  journal = {Der Hautarzt},
  volume = {70},
  year = {2019},
  publisher = {Springer Medizin}
}
  6. Ricarda M Schmithausen, Esther Sib, Martin Exner, Sylvia Hack, Claudia Rösing, Patrick Ciorba, Gabriele Bierbaum, Mykhailo Savin, Sally F Bloomfield, Martin Kaase, and others. The washing machine as a reservoir for transmission of extended-spectrum-beta-lactamase (CTX-M-15)-producing Klebsiella oxytoca ST201 to newborns. Applied and Environmental Microbiology. 2019. American Society for Microbiology 1752 N St., NW, Washington, DC.
    BibTeX 
    @article{schmithausen2019washing,
  title = {The washing machine as a reservoir for transmission of extended-spectrum-beta-lactamase (CTX-M-15)-producing Klebsiella oxytoca ST201 to newborns},
  author = {Schmithausen, Ricarda M and Sib, Esther and Exner, Martin and Hack, Sylvia and R{\"o}sing, Claudia and Ciorba, Patrick and Bierbaum, Gabriele and Savin, Mykhailo and Bloomfield, Sally F and Kaase, Martin and others},
  journal = {Applied and Environmental Microbiology},
  volume = {85},
  year = {2019},
  publisher = {American Society for Microbiology 1752 N St., NW, Washington, DC}
}
  7. Ricarda Schmithausen. One health-antibiotic resistance in human, animal and environmental hygiene. Rheinische Friedrich-Wilhelms-Universität Bonn. 2019.
    BibTeX 
    @phdthesis{schmithausen2019one,
  title = {One health-antibiotic resistance in human, animal and environmental hygiene},
  author = {Schmithausen, Ricarda},
  year = {2019},
  school = {Rheinische Friedrich-Wilhelms-Universit{\"a}t Bonn}
}
  8. Dennis Niebel, Thorsten Hornung, Ricarda Schmithausen, Hanna Rothe, Marijo Parcina, Joerg Wenzel, Martin Exner, and Thomas Bieber. Facial necrosis caused by orthopoxvirus: Differential diagnosis and dermatohistopathological correlation of infectious facial ulcers. Der Hautarzt; Zeitschrift fur Dermatologie, Venerologie, und Verwandte Gebiete. 2019.
    BibTeX 
    @article{niebel2019facial,
  title = {Facial necrosis caused by orthopoxvirus: Differential diagnosis and dermatohistopathological correlation of infectious facial ulcers},
  author = {Niebel, Dennis and Hornung, Thorsten and Schmithausen, Ricarda and Rothe, Hanna and Parcina, Marijo and Wenzel, Joerg and Exner, Martin and Bieber, Thomas},
  journal = {Der Hautarzt; Zeitschrift fur Dermatologie, Venerologie, und Verwandte Gebiete},
  volume = {70},
  year = {2019}
}
  9. Somali Chaterji, Jinkyu Koo, Ninghui Li, Folker Meyer, Ananth Grama, and Saurabh Bagchi. Federation in genomics pipelines: techniques and challenges. Briefings in bioinformatics. 2019.
    BibTeX 
    @article{chaterji_federation_2019,
  title = {Federation in genomics pipelines: techniques and challenges},
  volume = {20},
  journal = {Briefings in bioinformatics},
  author = {Chaterji, Somali and Koo, Jinkyu and Li, Ninghui and Meyer, Folker and Grama, Ananth and Bagchi, Saurabh},
  year = {2019},
  note = {Publisher: Oxford University Press}
}
  10. Folker Meyer, Saurabh Bagchi, Somali Chaterji, Wolfgang Gerlach, Ananth Grama, Travis Harrison, Tobias Paczian, William L Trimble, and Andreas Wilke. MG-RAST version 4—lessons learned from a decade of low-budget ultra-high-throughput metagenome analysis. Briefings in bioinformatics. 2019.
    BibTeX 
    @article{meyer_mg-rast_2019,
  title = {{MG}-{RAST} version 4—lessons learned from a decade of low-budget ultra-high-throughput metagenome analysis},
  volume = {20},
  journal = {Briefings in bioinformatics},
  author = {Meyer, Folker and Bagchi, Saurabh and Chaterji, Somali and Gerlach, Wolfgang and Grama, Ananth and Harrison, Travis and Paczian, Tobias and Trimble, William L and Wilke, Andreas},
  year = {2019},
  note = {Publisher: Oxford University Press}
}
  11. Ashraf Mahgoub, Paul Wood, Alexander Medoff, Subrata Mitra, Folker Meyer, Somali Chaterji, and Saurabh Bagchi. \{{SOPHIA\}\: Online Reconfiguration of Clustered \{{NoSQL\} Databases for \{{Time-Varying\} Workloads. 2019 USENIX Annual Technical Conference (USENIX ATC 19). 2019.
    BibTeX 
    @inproceedings{mahgoub_sophia_2019,
  title = {\$\{\${SOPHIA}\$\}\$: {Online} {Reconfiguration} of {Clustered} \$\{\${NoSQL}\$\}\$ {Databases} for \$\{\${Time}-{Varying}\$\}\$ {Workloads}},
  booktitle = {2019 {USENIX} {Annual} {Technical} {Conference} ({USENIX} {ATC} 19)},
  author = {Mahgoub, Ashraf and Wood, Paul and Medoff, Alexander and Mitra, Subrata and Meyer, Folker and Chaterji, Somali and Bagchi, Saurabh},
  year = {2019}
}
  12. Tobias Paczian, William L Trimble, Wolfgang Gerlach, Travis Harrison, Andreas Wilke, and Folker Meyer. The MG-RAST API explorer: an on-ramp for RESTful query composition. BMC bioinformatics. 2019.
    BibTeX 
    @article{paczian_mg-rast_2019,
  title = {The {MG}-{RAST} {API} explorer: an on-ramp for {RESTful} query composition},
  volume = {20},
  journal = {BMC bioinformatics},
  author = {Paczian, Tobias and Trimble, William L and Gerlach, Wolfgang and Harrison, Travis and Wilke, Andreas and Meyer, Folker},
  year = {2019},
  note = {Publisher: BioMed Central}
}
  13. Ashraf Mahgoub, Paul Wood, Alexander Medoff, Subrata Mitra, Folker Meyer, Somali Chaterji, and Saurabh Bagchi. SOPHIA: Online Reconfiguration of Clustered \{{NoSQL\} Databases for \{{Time-Varying\} Workloads. 2019 USENIX Annual Technical Conference (USENIX ATC 19). 2019.
    BibTeX 
    @inproceedings{mahgoub_sophia_2019-1,
  title = {SOPHIA: {Online} {Reconfiguration} of {Clustered} \$\{\${NoSQL}\$\}\$ {Databases} for \$\{\${Time}-{Varying}\$\}\$ {Workloads}},
  booktitle = {2019 {USENIX} {Annual} {Technical} {Conference} ({USENIX} {ATC} 19)},
  author = {Mahgoub, Ashraf and Wood, Paul and Medoff, Alexander and Mitra, Subrata and Meyer, Folker and Chaterji, Somali and Bagchi, Saurabh},
  year = {2019}
}

2018

  1. Peter Kämpfer, Stefanie P Glaeser, Gabriele Packroff, Katja Behringer, Martin Exner, Trinad Chakraborty, Ricarda M Schmithausen, and Swapnil Doijad. Lelliottia aquatilis sp. nov., isolated from drinking water. International Journal of Systematic and Evolutionary Microbiology. 2018. Microbiology Society.
    BibTeX 
    @article{kampfer2018lelliottia,
  title = {Lelliottia aquatilis sp. nov., isolated from drinking water},
  author = {K{\"a}mpfer, Peter and Glaeser, Stefanie P and Packroff, Gabriele and Behringer, Katja and Exner, Martin and Chakraborty, Trinad and Schmithausen, Ricarda M and Doijad, Swapnil},
  journal = {International Journal of Systematic and Evolutionary Microbiology},
  volume = {68},
  year = {2018},
  publisher = {Microbiology Society}
}
  2. Kathi Westphal-Settele, Sabine Konradi, Frederike Balzer, Jens Schönfeld, and Ricarda Schmithausen. Die Umwelt als Reservoir für Antibiotikaresistenzen. Bundesgesundheitsblatt-Gesundheitsforschung-Gesundheitsschutz. 2018. Springer Berlin Heidelberg.
    BibTeX 
    @article{westphal2018umwelt,
  title = {Die Umwelt als Reservoir f{\"u}r Antibiotikaresistenzen},
  author = {Westphal-Settele, Kathi and Konradi, Sabine and Balzer, Frederike and Sch{\"o}nfeld, Jens and Schmithausen, Ricarda},
  journal = {Bundesgesundheitsblatt-Gesundheitsforschung-Gesundheitsschutz},
  volume = {61},
  year = {2018},
  publisher = {Springer Berlin Heidelberg}
}
  3. Ricarda Maria Schmithausen, Martin Exner, Claudia Rösing, Michael Savin, Sylvia Hack, SF Bloomfield, Martin Kaase, Jürgen Gebel, Steffen Engelhart, and Daniel Exner. The washing machine as a reservoir for transmission of ESBL-producing Klebsiella oxytoca in newborns. bioRxiv. 2018. Cold Spring Harbor Laboratory.
    BibTeX 
    @article{schmithausen2018washing,
  title = {The washing machine as a reservoir for transmission of ESBL-producing Klebsiella oxytoca in newborns},
  author = {Schmithausen, Ricarda Maria and Exner, Martin and R{\"o}sing, Claudia and Savin, Michael and Hack, Sylvia and Bloomfield, SF and Kaase, Martin and Gebel, J{\"u}rgen and Engelhart, Steffen and Exner, Daniel},
  journal = {bioRxiv},
  year = {2018},
  publisher = {Cold Spring Harbor Laboratory}
}
  4. Kathi Westphal-Settele, Sabine Konradi, Frederike Balzer, Jens Schönfeld, and Ricarda Schmithausen. The environment as a reservoir for antimicrobial resistance: A growing problem for public health?. Bundesgesundheitsblatt, Gesundheitsforschung, Gesundheitsschutz. 2018.
    BibTeX 
    @article{westphal2018environment,
  title = {The environment as a reservoir for antimicrobial resistance: A growing problem for public health?},
  author = {Westphal-Settele, Kathi and Konradi, Sabine and Balzer, Frederike and Sch{\"o}nfeld, Jens and Schmithausen, Ricarda},
  journal = {Bundesgesundheitsblatt, Gesundheitsforschung, Gesundheitsschutz},
  volume = {61},
  year = {2018}
}
  5. Mohamed Ramadan El-Jade, Marijo Parcina, Ricarda Maria Schmithausen, Christoph Stein, Aline Meilaender, Achim Hoerauf, Ernst Molitor, and Isabelle Bekeredjian-Ding. ESBL Detection: Comparison of a Commercially Available Chromogenic Test for Third Generation Cephalosporine Resistance and Automated Susceptibility Testing in Enterobactericeae (vol 11, e0160203, 2016). PLOS ONE. 2018. PUBLIC LIBRARY SCIENCE 1160 BATTERY STREET, STE 100, SAN FRANCISCO, CA 94111 USA.
    BibTeX 
    @article{el2018esbl,
  title = {ESBL Detection: Comparison of a Commercially Available Chromogenic Test for Third Generation Cephalosporine Resistance and Automated Susceptibility Testing in Enterobactericeae (vol 11, e0160203, 2016)},
  author = {El-Jade, Mohamed Ramadan and Parcina, Marijo and Schmithausen, Ricarda Maria and Stein, Christoph and Meilaender, Aline and Hoerauf, Achim and Molitor, Ernst and Bekeredjian-Ding, Isabelle},
  journal = {PLOS ONE},
  volume = {13},
  year = {2018},
  publisher = {PUBLIC LIBRARY SCIENCE 1160 BATTERY STREET, STE 100, SAN FRANCISCO, CA 94111 USA}
}
  6. Ricarda Maria Schmithausen, Sophia Veronika Schulze-Geisthoevel, Céline Heinemann, Gabriele Bierbaum, Martin Exner, Brigitte Petersen, and Julia Steinhoff-Wagner. Reservoirs and transmission pathways of resistant indicator bacteria in the biotope pig stable and along the food chain: a review from a one health perspective. Sustainability. 2018. MDPI.
    BibTeX 
    @article{schmithausen2018reservoirs,
  title = {Reservoirs and transmission pathways of resistant indicator bacteria in the biotope pig stable and along the food chain: a review from a one health perspective},
  author = {Schmithausen, Ricarda Maria and Schulze-Geisthoevel, Sophia Veronika and Heinemann, C{\'e}line and Bierbaum, Gabriele and Exner, Martin and Petersen, Brigitte and Steinhoff-Wagner, Julia},
  journal = {Sustainability},
  volume = {10},
  year = {2018},
  publisher = {MDPI}
}
  7. U Heudorf, V Kempf, C Reinheimer, M Exner, Ricarda Schmithausen, C Imirzalioglu, and T Chakraborty. Klebsiella pneumoniae KPC-3 Ausbruch am Universitätsklinikum Frankfurt am Main–Teil II: weitere umwelthygienische Erkenntnisse. Das Gesundheitswesen. 2018. Georg Thieme Verlag KG.
    BibTeX 
    @article{heudorf2018klebsiella,
  title = {Klebsiella pneumoniae KPC-3 Ausbruch am Universit{\"a}tsklinikum Frankfurt am Main--Teil II: weitere umwelthygienische Erkenntnisse},
  author = {Heudorf, U and Kempf, V and Reinheimer, C and Exner, M and Schmithausen, Ricarda and Imirzalioglu, C and Chakraborty, T},
  journal = {Das Gesundheitswesen},
  volume = {80},
  year = {2018},
  publisher = {Georg Thieme Verlag KG}
}
  8. Martin Exner, Ricarda Schmithausen, and Werner Nissing. Trinkwasserhygiene–unverzichtbare Säule des öffentlichen Gesundheitsschutzes–Rückblick und Ausblick. Public Health Forum. 2018.
    BibTeX 
    @inproceedings{exner2018trinkwasserhygiene,
  title = {Trinkwasserhygiene--unverzichtbare S{\"a}ule des {\"o}ffentlichen Gesundheitsschutzes--R{\"u}ckblick und Ausblick},
  author = {Exner, Martin and Schmithausen, Ricarda and Nissing, Werner},
  booktitle = {Public Health Forum},
  volume = {26},
  year = {2018},
  organization = {De Gruyter}
}
  9. Martin Exner, Ricarda Schmithausen, Christiane Schreiber, Gabriele Bierbaum, Marijo Parcina, Steffen Engelhart, Thomas Kistemann, Esther Sib, Peter Walger, and Thomas Schwartz. Preliminary risk assessment from a hygienic me-dical perspective concerning antibiotic-resistant bacteria in water bodies, wastewater, bathing wa-ter and possible consequences for drinking water hygiene. Hyg Med. 2018.
    BibTeX 
    @article{exner2018preliminary,
  title = {Preliminary risk assessment from a hygienic me-dical perspective concerning antibiotic-resistant bacteria in water bodies, wastewater, bathing wa-ter and possible consequences for drinking water hygiene},
  author = {Exner, Martin and Schmithausen, Ricarda and Schreiber, Christiane and Bierbaum, Gabriele and Parcina, Marijo and Engelhart, Steffen and Kistemann, Thomas and Sib, Esther and Walger, Peter and Schwartz, Thomas},
  journal = {Hyg Med},
  volume = {43},
  year = {2018}
}
  10. Heike Müller, Esther Sib, Mike Gajdiss, Ursula Klanke, Franziska Lenz-Plet, Vanessa Barabasch, Cathrin Albert, Anna Schallenberg, Christian Timm, Nicole Zacharias, Schmithausen Ricarda M., S. Engelhart, M. Exner, M. Parcina, C. Schreiber, and G. Bierbaum. Dissemination of multi-resistant Gram-negative bacteria into German wastewater and surface waters. FEMS microbiology ecology. 2018. Oxford University Press.
    BibTeX 
    @article{muller2018dissemination,
  title = {Dissemination of multi-resistant Gram-negative bacteria into German wastewater and surface waters},
  author = {Müller, Heike and Sib, Esther and Gajdiss, Mike and Klanke, Ursula and Lenz-Plet, Franziska and Barabasch, Vanessa and Albert, Cathrin and Schallenberg, Anna and Timm, Christian and Zacharias, Nicole and M., Schmithausen Ricarda and Engelhart, S. and Exner, M. and Parcina, M. and Schreiber, C. and Bierbaum, G.},
  journal = {FEMS microbiology ecology},
  volume = {94},
  year = {2018},
  publisher = {Oxford University Press}
}
  11. Mohamed Ramadan El-Jade, Marijo Parcina, Ricarda Maria Schmithausen, Christoph Stein, Alina Meilaender, Achim Hoerauf, Ernst Molitor, and Isabelle Bekeredjian-Ding. Correction: ESBL detection: Comparison of a commercially available chromogenic test for third generation cephalosporine resistance and automated susceptibility testing in enterobactericeae. Plos one. 2018. Public Library of Science San Francisco, CA USA.
    BibTeX 
    @article{el2018correction,
  title = {Correction: ESBL detection: Comparison of a commercially available chromogenic test for third generation cephalosporine resistance and automated susceptibility testing in enterobactericeae},
  author = {El-Jade, Mohamed Ramadan and Parcina, Marijo and Schmithausen, Ricarda Maria and Stein, Christoph and Meilaender, Alina and Hoerauf, Achim and Molitor, Ernst and Bekeredjian-Ding, Isabelle},
  journal = {Plos one},
  volume = {13},
  year = {2018},
  publisher = {Public Library of Science San Francisco, CA USA}
}
  12. Martin Exner, Ricarda Schmithausen, Christiane Schreiber, Gabriele Bierbaum, Marijo Parcina, Steffen Engelhart, Thomas Kistemann, Esther Sib, Peter Walger, and Thomas Schwartz. Zum Vorkommen und zur vorläufigen hygienisch-medizinischen Bewertung von Antibiotika-resistenten Bakterien mit humanmedizinischer Bedeutung in Gewässern, Abwässern, Badegewässern sowie zu möglichen Konsequenzen für die Trinkwasserversorgung. Hyg Med. 2018.
    BibTeX 
    @article{exner2018vorkommen,
  title = {Zum Vorkommen und zur vorl{\"a}ufigen hygienisch-medizinischen Bewertung von Antibiotika-resistenten Bakterien mit humanmedizinischer Bedeutung in Gew{\"a}ssern, Abw{\"a}ssern, Badegew{\"a}ssern sowie zu m{\"o}glichen Konsequenzen f{\"u}r die Trinkwasserversorgung},
  author = {Exner, Martin and Schmithausen, Ricarda and Schreiber, Christiane and Bierbaum, Gabriele and Parcina, Marijo and Engelhart, Steffen and Kistemann, Thomas and Sib, Esther and Walger, Peter and Schwartz, Thomas},
  journal = {Hyg Med},
  volume = {43},
  year = {2018}
}
  13. M Exner, R Schmithausen, W Nissing, and others. Drinking water hygiene-indispensable pillar of public and global health-review and prospects.. Public Health Forum. 2018.
    BibTeX 
    @inproceedings{exner2018drinking,
  title = {Drinking water hygiene-indispensable pillar of public and global health-review and prospects.},
  author = {Exner, M and Schmithausen, R and Nissing, W and others},
  booktitle = {Public Health Forum},
  volume = {26},
  year = {2018},
  organization = {De Gruyter}
}
  14. A. P. Arkin, R. W. Cottingham, C. S. Henry, N. L. Harris, R. L. Stevens, S. Maslov, P. Dehal, D. Ware, F. Perez, S. Canon, M. W. Sneddon, M. L. Henderson, W. J. Riehl, D. Murphy-Olson, S. Y. Chan, R. T. Kamimura, S. Kumari, M. M. Drake, T. S. Brettin, E. M. Glass, D. Chivian, D. Gunter, D. J. Weston, B. H. Allen, J. Baumohl, A. A. Best, B. Bowen, S. E. Brenner, C. C. Bun, J. M. Chandonia, J. M. Chia, R. Colasanti, N. Conrad, J. J. Davis, B. H. Davison, M. DeJongh, S. Devoid, E. Dietrich, I. Dubchak, J. N. Edirisinghe, G. Fang, J. P. Faria, P. M. Frybarger, W. Gerlach, M. Gerstein, A. Greiner, J. Gurtowski, H. L. Haun, F. He, R. Jain, M. P. Joachimiak, K. P. Keegan, S. Kondo, V. Kumar, M. L. Land, Folker Meyer, M. Mills, P. S. Novichkov, T. Oh, G. J. Olsen, R. Olson, B. Parrello, S. Pasternak, E. Pearson, S. S. Poon, G. A. Price, S. Ramakrishnan, P. Ranjan, P. C. Ronald, M. C. Schatz, S. M. D. Seaver, M. Shukla, R. A. Sutormin, M. H. Syed, J. Thomason, N. L. Tintle, D. Wang, F. Xia, H. Yoo, S. Yoo, and D. Yu. KBase: The United States Department of Energy Systems Biology Knowledgebase. Nat Biotechnol. 2018. [doi] [url]
    BibTeX 
    @article{arkin_kbase_2018-1,
  title = {{KBase}: {The} {United} {States} {Department} of {Energy} {Systems} {Biology} {Knowledgebase}},
  volume = {36},
  url = {https://www.ncbi.nlm.nih.gov/pubmed/29979655},
  doi = {10.1038/nbt.4163},
  journal = {Nat Biotechnol},
  author = {Arkin, A. P. and Cottingham, R. W. and Henry, C. S. and Harris, N. L. and Stevens, R. L. and Maslov, S. and Dehal, P. and Ware, D. and Perez, F. and Canon, S. and Sneddon, M. W. and Henderson, M. L. and Riehl, W. J. and Murphy-Olson, D. and Chan, S. Y. and Kamimura, R. T. and Kumari, S. and Drake, M. M. and Brettin, T. S. and Glass, E. M. and Chivian, D. and Gunter, D. and Weston, D. J. and Allen, B. H. and Baumohl, J. and Best, A. A. and Bowen, B. and Brenner, S. E. and Bun, C. C. and Chandonia, J. M. and Chia, J. M. and Colasanti, R. and Conrad, N. and Davis, J. J. and Davison, B. H. and DeJongh, M. and Devoid, S. and Dietrich, E. and Dubchak, I. and Edirisinghe, J. N. and Fang, G. and Faria, J. P. and Frybarger, P. M. and Gerlach, W. and Gerstein, M. and Greiner, A. and Gurtowski, J. and Haun, H. L. and He, F. and Jain, R. and Joachimiak, M. P. and Keegan, K. P. and Kondo, S. and Kumar, V. and Land, M. L. and Meyer, Folker and Mills, M. and Novichkov, P. S. and Oh, T. and Olsen, G. J. and Olson, R. and Parrello, B. and Pasternak, S. and Pearson, E. and Poon, S. S. and Price, G. A. and Ramakrishnan, S. and Ranjan, P. and Ronald, P. C. and Schatz, M. C. and Seaver, S. M. D. and Shukla, M. and Sutormin, R. A. and Syed, M. H. and Thomason, J. and Tintle, N. L. and Wang, D. and Xia, F. and Yoo, H. and Yoo, S. and Yu, D.},
  year = {2018},
  note = {Type: Journal Article},
  keywords = {Computational Biology/*methods Database Management Systems/*trends Humans *Knowledge Bases Systems Biology/*trends United States}
}
  15. R. M. Bowers, N. C. Kyrpides, R. Stepanauskas, M. Harmon-Smith, D. Doud, T. B. K. Reddy, F. Schulz, J. Jarett, A. R. Rivers, E. A. Eloe-Fadrosh, S. G. Tringe, N. N. Ivanova, A. Copeland, A. Clum, E. D. Becraft, R. R. Malmstrom, B. Birren, M. Podar, P. Bork, G. M. Weinstock, G. M. Garrity, J. A. Dodsworth, S. Yooseph, G. Sutton, F. O. Glockner, J. A. Gilbert, W. C. Nelson, S. J. Hallam, S. P. Jungbluth, T. J. G. Ettema, S. Tighe, K. T. Konstantinidis, W. T. Liu, B. J. Baker, T. Rattei, J. A. Eisen, B. Hedlund, K. D. McMahon, N. Fierer, R. Knight, R. Finn, G. Cochrane, I. Karsch-Mizrachi, G. W. Tyson, C. Rinke, Consortium Genome Standards, A. Lapidus, Folker Meyer, P. Yilmaz, D. H. Parks, A. M. Eren, L. Schriml, J. F. Banfield, P. Hugenholtz, and T. Woyke. Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea. Nat Biotechnol. 2018. [doi] [url]
    BibTeX 
    @article{bowers_corrigendum_2018,
  title = {Corrigendum: {Minimum} information about a single amplified genome ({MISAG}) and a metagenome-assembled genome ({MIMAG}) of bacteria and archaea},
  volume = {36},
  url = {https://www.ncbi.nlm.nih.gov/pubmed/29979671},
  doi = {10.1038/nbt0718-660a},
  journal = {Nat Biotechnol},
  author = {Bowers, R. M. and Kyrpides, N. C. and Stepanauskas, R. and Harmon-Smith, M. and Doud, D. and Reddy, T. B. K. and Schulz, F. and Jarett, J. and Rivers, A. R. and Eloe-Fadrosh, E. A. and Tringe, S. G. and Ivanova, N. N. and Copeland, A. and Clum, A. and Becraft, E. D. and Malmstrom, R. R. and Birren, B. and Podar, M. and Bork, P. and Weinstock, G. M. and Garrity, G. M. and Dodsworth, J. A. and Yooseph, S. and Sutton, G. and Glockner, F. O. and Gilbert, J. A. and Nelson, W. C. and Hallam, S. J. and Jungbluth, S. P. and Ettema, T. J. G. and Tighe, S. and Konstantinidis, K. T. and Liu, W. T. and Baker, B. J. and Rattei, T. and Eisen, J. A. and Hedlund, B. and McMahon, K. D. and Fierer, N. and Knight, R. and Finn, R. and Cochrane, G. and Karsch-Mizrachi, I. and Tyson, G. W. and Rinke, C. and Genome Standards, Consortium and Lapidus, A. and Meyer, Folker and Yilmaz, P. and Parks, D. H. and Eren, A. M. and Schriml, L. and Banfield, J. F. and Hugenholtz, P. and Woyke, T.},
  year = {2018},
  note = {Type: Journal Article}
}

2017

  1. Kraiselburd I, Moyano L, Carrau A, Tano J, and Orellano EG. Bacterial Photosensory Proteins and Their Role in Plant-pathogen Interactions.. Photochemistry and photobiology. 2017. [doi]
    BibTeX 
    @article{PMID:28500702,
  title = {Bacterial Photosensory Proteins and Their Role in Plant-pathogen Interactions.},
  author = {I, Kraiselburd and L, Moyano and A, Carrau and J, Tano and EG, Orellano},
  doi = {10.1111/php.12754},
  journal = {Photochemistry and photobiology},
  month = may,
  year = {2017}
}
  2. Ivana Kraiselburd, Laura Moyano, Analía Carrau, Josefina Tano, and Elena G Orellano. Bacterial Photosensory Proteins and Their Role in Plant–pathogen Interactions. Photochemistry and Photobiology. 2017.
    BibTeX 
    @article{Kraiselburd2017BacterialPP,
  title = {Bacterial Photosensory Proteins and Their Role in Plant–pathogen Interactions},
  author = {Kraiselburd, Ivana and Moyano, Laura and Carrau, Anal{\'i}a and Tano, Josefina and Orellano, Elena G},
  journal = {Photochemistry and Photobiology},
  year = {2017},
  volume = {93}
}
  3. Martin Exner, Sanjay Bhattacharya, Bärbel Christiansen, Jürgen Gebel, Peter Goroncy-Bermes, Philippe Hartemann, Peter Heeg, Carola Ilschner, Axel Kramer, Elaine Larson, W. Merkens, M. Mielke, P. Oltmanns, B. Ross, M. Rotter, Ricarda M. Schmithausen, HG. Sonntag, and M. Trautmann. Antibiotic resistance: What is so special about multidrug-resistant Gram-negative bacteria?. GMS hygiene and infection control. 2017. German Medical Science.
    BibTeX 
    @article{exner2017antibiotic,
  title = {Antibiotic resistance: What is so special about multidrug-resistant Gram-negative bacteria?},
  author = {Exner, Martin and Bhattacharya, Sanjay and Christiansen, B{\"a}rbel and Gebel, J{\"u}rgen and Goroncy-Bermes, Peter and Hartemann, Philippe and Heeg, Peter and Ilschner, Carola and Kramer, Axel and Larson, Elaine and Merkens, W. and Mielke, M. and Oltmanns, P. and Ross, B. and Rotter, M. and Schmithausen, Ricarda M. and Sonntag, HG. and Trautmann, M.},
  journal = {GMS hygiene and infection control},
  volume = {12},
  year = {2017},
  publisher = {German Medical Science}
}
  4. C Heinemann, Ricarda M. Schmithausen, E Sib, I Meyer, B Petersen, and J Steinhoff-Wagner. Preventive effect of nasal lavage with physiologic saline on the colonization with MRSA after working in porcine stable. Journal of Animal Science. 2017. Oxford University Press.
    BibTeX 
    @article{heinemann2017preventive,
  title = {Preventive effect of nasal lavage with physiologic saline on the colonization with MRSA after working in porcine stable},
  author = {Heinemann, C and Schmithausen, Ricarda M. and Sib, E and Meyer, I and Petersen, B and Steinhoff-Wagner, J},
  journal = {Journal of Animal Science},
  volume = {95},
  year = {2017},
  publisher = {Oxford University Press}
}
  5. Dominik Schuster, Jasmin Rickmeyer, Mike Gajdiss, Thorsten Thye, Stephan Lorenzen, Marion Reif, Michaele Josten, Christiane Szekat, Luı́s DR Melo, Ricarda M Schmithausen, and others. Differentiation of Staphylococcus argenteus (formerly: Staphylococcus aureus clonal complex 75) by mass spectrometry from S. aureus using the first strain isolated from a wild African great ape. International Journal of Medical Microbiology. 2017. Elsevier.
    BibTeX 
    @article{schuster2017differentiation,
  title = {Differentiation of Staphylococcus argenteus (formerly: Staphylococcus aureus clonal complex 75) by mass spectrometry from S. aureus using the first strain isolated from a wild African great ape},
  author = {Schuster, Dominik and Rickmeyer, Jasmin and Gajdiss, Mike and Thye, Thorsten and Lorenzen, Stephan and Reif, Marion and Josten, Michaele and Szekat, Christiane and Melo, Lu{\'\i}s DR and Schmithausen, Ricarda M and others},
  journal = {International Journal of Medical Microbiology},
  volume = {307},
  year = {2017},
  publisher = {Elsevier}
}
  6. M Exner, S Bhattacharya, B Christiansen, J Gebel, P Goroncy-Bermes, P Hartemann, P Heeg, C Ilschner, A Kramer, E Larson, and others. Antibiotic resistance: what is so special about multidrug-resistant Gram-negative bacteria? GMS Hyg Infect Control 12: Doc05. 2017.
    BibTeX 
    @misc{exner2017antibiotid,
  title = {Antibiotic resistance: what is so special about multidrug-resistant Gram-negative bacteria? GMS Hyg Infect Control 12: Doc05},
  author = {Exner, M and Bhattacharya, S and Christiansen, B and Gebel, J and Goroncy-Bermes, P and Hartemann, P and Heeg, P and Ilschner, C and Kramer, A and Larson, E and others},
  year = {2017}
}
  7. P. Ten Hoopen, R. D. Finn, L. A. Bongo, E. Corre, B. Fosso, Folker Meyer, A. Mitchell, E. Pelletier, G. Pesole, M. Santamaria, N. P. Willassen, and G. Cochrane. The metagenomic data life-cycle: standards and best practices. Gigascience. 2017. [doi] [url]
    BibTeX 
    @article{ten_hoopen_metagenomic_2017,
  title = {The metagenomic data life-cycle: standards and best practices},
  volume = {6},
  url = {https://www.ncbi.nlm.nih.gov/pubmed/28637310},
  doi = {10.1093/gigascience/gix047},
  journal = {Gigascience},
  author = {Ten Hoopen, P. and Finn, R. D. and Bongo, L. A. and Corre, E. and Fosso, B. and Meyer, Folker and Mitchell, A. and Pelletier, E. and Pesole, G. and Santamaria, M. and Willassen, N. P. and Cochrane, G.},
  year = {2017},
  note = {Type: Journal Article}
}
  8. Andreas Wilke, Wolfgang Gerlach, Travis Harrison, Tobias Paczian, William L Trimble, and Folker Meyer. MG-RAST manual for version 4, revision 3. Lemont, IL: Argonne National Laboratory. 2017.
    BibTeX 
    @article{wilke_mg-rast_2017,
  title = {{MG}-{RAST} manual for version 4, revision 3},
  journal = {Lemont, IL: Argonne National Laboratory},
  author = {Wilke, Andreas and Gerlach, Wolfgang and Harrison, Travis and Paczian, Tobias and Trimble, William L and Meyer, Folker},
  year = {2017}
}
  9. Ashraf Mahgoub, Sachandhan Ganesh, Folker Meyer, Ananth Grama, and Somali Chaterji. Suitability of nosql systems—cassandra and scylladb—for iot workloads. 2017 9th International Conference on Communication Systems and Networks (COMSNETS). 2017. IEEE.
    BibTeX 
    @inproceedings{mahgoub_suitability_2017,
  title = {Suitability of nosql systems—cassandra and scylladb—for iot workloads},
  booktitle = {2017 9th {International} {Conference} on {Communication} {Systems} and {Networks} ({COMSNETS})},
  publisher = {IEEE},
  author = {Mahgoub, Ashraf and Ganesh, Sachandhan and Meyer, Folker and Grama, Ananth and Chaterji, Somali},
  year = {2017}
}
  10. Ashraf Mahgoub, Paul Wood, Sachandhan Ganesh, Subrata Mitra, Wolfgang Gerlach, Travis Harrison, Folker Meyer, Ananth Grama, Saurabh Bagchi, and Somali Chaterji. Rafiki: A middleware for parameter tuning of nosql datastores for dynamic metagenomics workloads. Proceedings of the 18th ACM/IFIP/USENIX Middleware Conference. 2017.
    BibTeX 
    @inproceedings{mahgoub_rafiki_2017,
  title = {Rafiki: {A} middleware for parameter tuning of nosql datastores for dynamic metagenomics workloads},
  booktitle = {Proceedings of the 18th {ACM}/{IFIP}/{USENIX} {Middleware} {Conference}},
  author = {Mahgoub, Ashraf and Wood, Paul and Ganesh, Sachandhan and Mitra, Subrata and Gerlach, Wolfgang and Harrison, Travis and Meyer, Folker and Grama, Ananth and Bagchi, Saurabh and Chaterji, Somali},
  year = {2017}
}
  11. Mahgoub A, Ganesh S, Meyer Folker, Grama A, and Chaterji S. Suitability of NoSQL systems—Cassandra and ScyllaDB—for IoT workloads. IEEE/ACM COMSNETS 2017. 2017.
    BibTeX 
    @inproceedings{mahgoub_a_suitability_2017,
  title = {Suitability of {NoSQL} systems—{Cassandra} and {ScyllaDB}—for {IoT} workloads},
  booktitle = {{IEEE}/{ACM} {COMSNETS} 2017},
  author = {A, Mahgoub and S, Ganesh and Folker, Meyer and A, Grama and S, Chaterji},
  year = {2017}
}

2016

  1. E. Mladenov, S. Magin, A. Soni, and G. Iliakis. DNA double-strand-break repair in higher eukaryotes and its role in genomic instability and cancer: Cell cycle and proliferation-dependent regulation. Semin Cancer Biol. 2016. [doi] [url]
    BibTeX 
    @article{RN1739,
  author = {Mladenov, E. and Magin, S. and Soni, A. and Iliakis, G.},
  title = {DNA double-strand-break repair in higher eukaryotes and its role in genomic instability and cancer: Cell cycle and proliferation-dependent regulation},
  journal = {Semin Cancer Biol},
  volume = {37-38},
  pages = {51-64},
  note = {Mladenov, Emil
  Magin, Simon
  Soni, Aashish
  Iliakis, George
  eng
  Review
  Research Support, Non-U.S. Gov't
  England
  2016/03/27
  Semin Cancer Biol. 2016 Jun;37-38:51-64. doi: 10.1016/j.semcancer.2016.03.003. Epub 2016 Mar 22.},
  keywords = {Cell Cycle/genetics
  Cell Proliferation/genetics
  *DNA Breaks, Double-Stranded
  *DNA Repair
  *Genomic Instability
  Humans
  Neoplasms/*genetics/immunology/*pathology
  Recombinational DNA Repair
  *Cell cycle regulation
  *Cell growth regulation
  *DNA end resection
  *Double strand break repair
  *hrr
  *Pathway choice
  *ssa
  *alt-EJ
  *c-NHEJ},
  issn = {1096-3650 (Electronic)
  1044-579X (Linking)},
  doi = {10.1016/j.semcancer.2016.03.003},
  url = {https://www.ncbi.nlm.nih.gov/pubmed/27016036},
  year = {2016},
  type = {Journal Article}
}
  2. María Laura Tondo, María Laura Delprato, Ivana Kraiselburd, María Verónica Fernández Zenoff, María Eugenia Farías, and Elena G Orellano. KatG, the Bifunctional Catalase of Xanthomonas citri subsp. citri, Responds to Hydrogen Peroxide and Contributes to Epiphytic Survival on Citrus Leaves. PLoS ONE. 2016.
    BibTeX 
    @article{Tondo2016KatGTB,
  title = {KatG, the Bifunctional Catalase of Xanthomonas citri subsp. citri, Responds to Hydrogen Peroxide and Contributes to Epiphytic Survival on Citrus Leaves},
  author = {Tondo, Mar{\'i}a Laura and Delprato, Mar{\'i}a Laura and Kraiselburd, Ivana and Zenoff, Mar{\'i}a Ver{\'o}nica Fern{\'a}ndez and Far{\'i}as, Mar{\'i}a Eugenia and Orellano, Elena G},
  journal = {PLoS ONE},
  year = {2016},
  volume = {11}
}
  3. Virginia Helena Albarracín, Ivana Kraiselburd, Christian Bamann, Phillip G. Wood, Ernst Bamberg, María Eugenia Farías, and Wolfgang Gärtner. Functional Green-Tuned Proteorhodopsin from Modern Stromatolites. PLoS ONE. 2016.
    BibTeX 
    @article{Albarracn2016FunctionalGP,
  title = {Functional Green-Tuned Proteorhodopsin from Modern Stromatolites},
  author = {Albarrac{\'i}n, Virginia Helena and Kraiselburd, Ivana and Bamann, Christian and Wood, Phillip G. and Bamberg, Ernst and Far{\'i}as, Mar{\'i}a Eugenia and G{\"a}rtner, Wolfgang},
  journal = {PLoS ONE},
  year = {2016},
  volume = {11}
}
  4. Mohamed Ramadan El-Jade, Marijo Parcina, Ricarda Maria Schmithausen, Christoph Stein, Alina Meilaender, Achim Hoerauf, Ernst Molitor, and Isabelle Bekeredjian-Ding. ESBL detection: comparison of a commercially available chromogenic test for third generation cephalosporine resistance and automated susceptibility testing in Enterobactericeae. PloS one. 2016. Public Library of Science San Francisco, CA USA.
    BibTeX 
    @article{el2016esbl,
  title = {ESBL detection: comparison of a commercially available chromogenic test for third generation cephalosporine resistance and automated susceptibility testing in Enterobactericeae},
  author = {El-Jade, Mohamed Ramadan and Parcina, Marijo and Schmithausen, Ricarda Maria and Stein, Christoph and Meilaender, Alina and Hoerauf, Achim and Molitor, Ernst and Bekeredjian-Ding, Isabelle},
  journal = {PloS one},
  volume = {11},
  year = {2016},
  publisher = {Public Library of Science San Francisco, CA USA}
}
  5. Sophia Veronika Schulze-Geisthövel, Elisa-Valerie Tappe, Ricarda Maria Schmithausen, Jan Lepkojis, Katharina Röttgen, and Brigitte Petersen. Survey on the risk awareness of german pig and cattle farmers in relation to dealing with MRSA and antibiotics. Infection Ecology & Epidemiology. 2016. Taylor & Francis.
    BibTeX 
    @article{schulze2016survey,
  title = {Survey on the risk awareness of german pig and cattle farmers in relation to dealing with MRSA and antibiotics},
  author = {Schulze-Geisth{\"o}vel, Sophia Veronika and Tappe, Elisa-Valerie and Schmithausen, Ricarda Maria and Lepkojis, Jan and R{\"o}ttgen, Katharina and Petersen, Brigitte},
  journal = {Infection Ecology \& Epidemiology},
  volume = {6},
  year = {2016},
  publisher = {Taylor \& Francis}
}
  6. RM Schmithausen, SV Schulze-Geisthövel, A Hoerauf, M Exner, G Bierbaum, I Bekeredjian-Ding, and B Petersen. MRSA und ESBL-E in der Schweineproduktion. Zuchtungskunde. 2016.
    BibTeX 
    @article{schmithausen2016mrsa,
  title = {MRSA und ESBL-E in der Schweineproduktion},
  author = {Schmithausen, RM and Schulze-Geisth{\"o}vel, SV and Hoerauf, A and Exner, M and Bierbaum, G and Bekeredjian-Ding, I and Petersen, B},
  journal = {Zuchtungskunde},
  volume = {88},
  year = {2016}
}
  7. A. Wilke, J. Bischof, W. Gerlach, E. Glass, T. Harrison, K. P. Keegan, T. Paczian, W. L. Trimble, S. Bagchi, A. Grama, S. Chaterji, and Folker Meyer. The MG-RAST metagenomics database and portal in 2015. Nucleic Acids Res. 2016. [doi] [url]
    BibTeX 
    @article{wilke_mg-rast_2016-1,
  title = {The {MG}-{RAST} metagenomics database and portal in 2015},
  volume = {44},
  url = {https://www.ncbi.nlm.nih.gov/pubmed/26656948},
  doi = {10.1093/nar/gkv1322},
  journal = {Nucleic Acids Res},
  author = {Wilke, A. and Bischof, J. and Gerlach, W. and Glass, E. and Harrison, T. and Keegan, K. P. and Paczian, T. and Trimble, W. L. and Bagchi, S. and Grama, A. and Chaterji, S. and Meyer, Folker},
  year = {2016}
}
  8. S. L. O’Brien, S. M. Gibbons, S. M. Owens, J. Hampton-Marcell, E. R. Johnston, J. D. Jastrow, J. A. Gilbert, Folker Meyer, and D. A. Antonopoulos. Spatial scale drives patterns in soil bacterial diversity. Environ Microbiol. 2016. [doi] [url]
    BibTeX 
    @article{obrien_spatial_2016,
  title = {Spatial scale drives patterns in soil bacterial diversity},
  volume = {18},
  url = {https://www.ncbi.nlm.nih.gov/pubmed/26914164},
  doi = {10.1111/1462-2920.13231},
  journal = {Environ Microbiol},
  author = {O'Brien, S. L. and Gibbons, S. M. and Owens, S. M. and Hampton-Marcell, J. and Johnston, E. R. and Jastrow, J. D. and Gilbert, J. A. and Meyer, Folker and Antonopoulos, D. A.},
  year = {2016},
  note = {Type: Journal Article}
}
  9. K. P. Keegan, E. M. Glass, and Folker Meyer. MG-RAST, a Metagenomics Service for Analysis of Microbial Community Structure and Function. Methods Mol Biol. 2016. [doi] [url]
    BibTeX 
    @article{keegan_mg-rast_2016,
  title = {{MG}-{RAST}, a {Metagenomics} {Service} for {Analysis} of {Microbial} {Community} {Structure} and {Function}},
  volume = {1399},
  url = {https://www.ncbi.nlm.nih.gov/pubmed/26791506},
  doi = {10.1007/978-1-4939-3369-3_13},
  journal = {Methods Mol Biol},
  author = {Keegan, K. P. and Glass, E. M. and Meyer, Folker},
  year = {2016},
  note = {Type: Journal Article}
}
  10. A. Howe, D. L. Ringus, R. J. Williams, Z. N. Choo, S. M. Greenwald, S. M. Owens, M. L. Coleman, Folker Meyer, and E. B. Chang. Divergent responses of viral and bacterial communities in the gut microbiome to dietary disturbances in mice. ISME J. 2016. [doi] [url]
    BibTeX 
    @article{howe_divergent_2016,
  title = {Divergent responses of viral and bacterial communities in the gut microbiome to dietary disturbances in mice},
  volume = {10},
  url = {https://www.ncbi.nlm.nih.gov/pubmed/26473721},
  doi = {10.1038/ismej.2015.183},
  journal = {ISME J},
  author = {Howe, A. and Ringus, D. L. and Williams, R. J. and Choo, Z. N. and Greenwald, S. M. and Owens, S. M. and Coleman, M. L. and Meyer, Folker and Chang, E. B.},
  year = {2016},
  note = {Type: Journal Article}
}
  11. Caitlin Ross, Misbah Mubarak, John Jenkins, Philip Carns, Christopher D Carothers, Robert Ross, Wei Tang, Wolfgang Gerlach, and Folker Meyer. A case study in using discrete-event simulation to improve the scalability of MG-RAST. Proceedings of the 2016 ACM SIGSIM Conference on Principles of Advanced Discrete Simulation. 2016.
    BibTeX 
    @inproceedings{ross_case_2016,
  title = {A case study in using discrete-event simulation to improve the scalability of {MG}-{RAST}},
  booktitle = {Proceedings of the 2016 {ACM} {SIGSIM} {Conference} on {Principles} of {Advanced} {Discrete} {Simulation}},
  author = {Ross, Caitlin and Mubarak, Misbah and Jenkins, John and Carns, Philip and Carothers, Christopher D and Ross, Robert and Tang, Wei and Gerlach, Wolfgang and Meyer, Folker},
  year = {2016}
}
  12. Adina Howe, Fan Yang, Ryan J Williams, Folker Meyer, and Kirsten S Hofmockel. Identification of the core set of carbon-associated genes in a bioenergy grassland soil. PLoS One. 2016.
    BibTeX 
    @article{howe_identification_2016,
  title = {Identification of the core set of carbon-associated genes in a bioenergy grassland soil},
  volume = {11},
  journal = {PLoS One},
  author = {Howe, Adina and Yang, Fan and Williams, Ryan J and Meyer, Folker and Hofmockel, Kirsten S},
  year = {2016},
  note = {Publisher: Public Library of Science San Francisco, CA USA}
}
  13. William L Trimble, Stephanie M Greenwald, Sarah Owens, Elizabeth M Glass, and Folker Meyer. Metagenomic design and sequencing. Field Guidelines for Genetic Experimental Designs in High-Throughput Sequencing. 2016. Springer, Cham.
    BibTeX 
    @incollection{trimble_metagenomic_2016,
  title = {Metagenomic design and sequencing},
  booktitle = {Field {Guidelines} for {Genetic} {Experimental} {Designs} in {High}-{Throughput} {Sequencing}},
  publisher = {Springer, Cham},
  author = {Trimble, William L and Greenwald, Stephanie M and Owens, Sarah and Glass, Elizabeth M and Meyer, Folker},
  year = {2016}
}
  14. Kevin P Keegan, Elizabeth M Glass, and Folker Meyer. MG-RAST, a metagenomics service for analysis of microbial community structure and function. Microbial environmental genomics (MEG). 2016. Humana Press, New York, NY.
    BibTeX 
    @incollection{keegan_mg-rast_2016-1,
  title = {{MG}-{RAST}, a metagenomics service for analysis of microbial community structure and function},
  booktitle = {Microbial environmental genomics ({MEG})},
  publisher = {Humana Press, New York, NY},
  author = {Keegan, Kevin P and Glass, Elizabeth M and Meyer, Folker},
  year = {2016}
}

2015

  1. Simon. Magin, M. Papaioannou, J. Saha, C. Staudt, and G. Iliakis. Inhibition of Homologous Recombination and Promotion of Mutagenic Repair of DNA Double-Strand Breaks Underpins Arabinoside-Nucleoside Analogue Radiosensitization. Mol Cancer Ther. 2015. [doi] [url]
    BibTeX 
    @article{RN1738,
  author = {Magin, Simon. and Papaioannou, M. and Saha, J. and Staudt, C. and Iliakis, G.},
  title = {Inhibition of Homologous Recombination and Promotion of Mutagenic Repair of DNA Double-Strand Breaks Underpins Arabinoside-Nucleoside Analogue Radiosensitization},
  journal = {Mol Cancer Ther},
  volume = {14},
  number = {6},
  pages = {1424-33},
  note = {Magin, Simon
  Papaioannou, Maria
  Saha, Janapriya
  Staudt, Christian
  Iliakis, George
  eng
  Research Support, Non-U.S. Gov't
  2015/04/05
  Mol Cancer Ther. 2015 Jun;14(6):1424-33. doi: 10.1158/1535-7163.MCT-14-0682. Epub 2015 Apr 3.},
  keywords = {Blotting, Western
  Cell Line, Tumor
  Cell Proliferation/drug effects/radiation effects
  Cytarabine/*pharmacology
  DNA Breaks, Double-Stranded/*drug effects/radiation effects
  DNA Repair/*drug effects/radiation effects
  Dose-Response Relationship, Drug
  Dose-Response Relationship, Radiation
  Green Fluorescent Proteins/genetics/metabolism
  Homologous Recombination/*drug effects/radiation effects
  Humans
  Microscopy, Confocal
  RNA Interference
  Rad51 Recombinase/genetics/metabolism
  Radiation-Sensitizing Agents/pharmacology
  Vidarabine/*analogs & derivatives/*pharmacology
  X-Rays},
  issn = {1538-8514 (Electronic)
  1535-7163 (Linking)},
  doi = {10.1158/1535-7163.MCT-14-0682},
  url = {https://www.ncbi.nlm.nih.gov/pubmed/25840584},
  year = {2015},
  type = {Journal Article}
}
  2. Ivana Kraiselburd, Alexander Gutt, Aba Losi, Wolfgang Gärtner, and Elena G Orellano. Functional Characterization of a LOV‐Histidine Kinase Photoreceptor from Xanthomonas citri subsp. citri. Photochemistry and Photobiology. 2015.
    BibTeX 
    @article{Kraiselburd2015FunctionalCO,
  title = {Functional Characterization of a LOV‐Histidine Kinase Photoreceptor from Xanthomonas citri subsp. citri},
  author = {Kraiselburd, Ivana and Gutt, Alexander and Losi, Aba and G{\"a}rtner, Wolfgang and Orellano, Elena G},
  journal = {Photochemistry and Photobiology},
  year = {2015},
  volume = {91}
}
  3. Ricarda Maria Schmithausen, Sophia Veronika Schulze-Geisthoevel, Franziska Stemmer, Mohamed El-Jade, Marion Reif, Sylvia Hack, Alina Meilaender, Gabriele Montabauer, Rolf Fimmers, Marijo Parcina, and others. Analysis of transmission of MRSA and ESBL-E among pigs and farm personnel. PloS one. 2015. Public Library of Science.
    BibTeX 
    @article{schmithausen2015analysis,
  title = {Analysis of transmission of MRSA and ESBL-E among pigs and farm personnel},
  author = {Schmithausen, Ricarda Maria and Schulze-Geisthoevel, Sophia Veronika and Stemmer, Franziska and El-Jade, Mohamed and Reif, Marion and Hack, Sylvia and Meilaender, Alina and Montabauer, Gabriele and Fimmers, Rolf and Parcina, Marijo and others},
  journal = {PloS one},
  volume = {10},
  year = {2015},
  publisher = {Public Library of Science}
}
  4. Ricarda Maria Schmithausen, Sophia Ricarda Kellner, Sophia Veronika Schulze-Geisthoevel, Sylvia Hack, Steffen Engelhart, Isabel Bodenstein, Nahed Al-Sabti, Marion Reif, Rolf Fimmers, Barbara Körber-Irrgang, and others. Eradication of methicillin-resistant Staphylococcus aureus and of Enterobacteriaceae expressing extended-spectrum beta-lactamases on a model pig farm. Applied and environmental microbiology. 2015. American Society for Microbiology.
    BibTeX 
    @article{schmithausen2015eradication,
  title = {Eradication of methicillin-resistant Staphylococcus aureus and of Enterobacteriaceae expressing extended-spectrum beta-lactamases on a model pig farm},
  author = {Schmithausen, Ricarda Maria and Kellner, Sophia Ricarda and Schulze-Geisthoevel, Sophia Veronika and Hack, Sylvia and Engelhart, Steffen and Bodenstein, Isabel and Al-Sabti, Nahed and Reif, Marion and Fimmers, Rolf and K{\"o}rber-Irrgang, Barbara and others},
  journal = {Applied and environmental microbiology},
  volume = {81},
  year = {2015},
  publisher = {American Society for Microbiology}
}
  5. A. Wilke, J. Bischof, T. Harrison, T. Brettin, M. D’Souza, W. Gerlach, H. Matthews, T. Paczian, J. Wilkening, E. M. Glass, N. Desai, and Folker Meyer. A RESTful API for accessing microbial community data for MG-RAST. PLoS Comput Biol. 2015. [doi] [url]
    BibTeX 
    @article{wilke_restful_2015,
  title = {A {RESTful} {API} for accessing microbial community data for {MG}-{RAST}},
  volume = {11},
  url = {https://www.ncbi.nlm.nih.gov/pubmed/25569221},
  doi = {10.1371/journal.pcbi.1004008},
  journal = {PLoS Comput Biol},
  author = {Wilke, A. and Bischof, J. and Harrison, T. and Brettin, T. and D'Souza, M. and Gerlach, W. and Matthews, H. and Paczian, T. and Wilkening, J. and Glass, E. M. and Desai, N. and Meyer, Folker},
  year = {2015},
  note = {Type: Journal Article}
}
  6. Wolfgang Gerlach, Wei Tang, Kevin Keegan, Travis Harrison, Andreas Wilke, Jared Bischof, Mark D’Souza, Scott Devoid, Daniel Murphy-Olson, and Narayan Desai. Skyport: container-based execution environment management for multi-cloud scientific workflows. Proceedings of the 5th International Workshop on Data-Intensive Computing in the Clouds. 2015. IEEE Press.
    BibTeX 
    @inproceedings{gerlach_skyport,
  title = {Skyport: container-based execution environment management for multi-cloud scientific workflows},
  booktitle = {Proceedings of the 5th {International} {Workshop} on {Data}-{Intensive} {Computing} in the {Clouds}},
  publisher = {IEEE Press},
  author = {Gerlach, Wolfgang and Tang, Wei and Keegan, Kevin and Harrison, Travis and Wilke, Andreas and Bischof, Jared and D'Souza, Mark and Devoid, Scott and Murphy-Olson, Daniel and Desai, Narayan},
  note = {Type: Conference Proceedings},
  year = {2015}
}
  7. Andreas Wilke, Elizabeth M Glass, Jared Bischof, Daniel Braithwaite, W Gerlach, T Harrison, K Keegan, T Paczian, WL Trimble, and F Meyer. MG-RAST Manural for version 3.6, revision 3. 2015. MGRAST.
    BibTeX 
    @misc{wilke_mg-rast_2015,
  title = {{MG}-{RAST} {Manural} for version 3.6, revision 3},
  publisher = {MGRAST},
  author = {Wilke, Andreas and Glass, Elizabeth M and Bischof, Jared and Braithwaite, Daniel and Gerlach, W and Harrison, T and Keegan, K and Paczian, T and Trimble, WL and Meyer, F},
  year = {2015}
}
  8. Andreas Wilke, Jared Bischof, Travis Harrison, Tom Brettin, Mark D’Souza, Wolfgang Gerlach, Hunter Matthews, Tobias Paczian, Jared Wilkening, Elizabeth M. Glass, and Folker Narayan Meyer Desai. A RESTful API for Accessing Microbial Community Data for MG-RAST. PLoS Computational Biology. 2015.
    BibTeX 
    @article{wilke_a_restful_2015,
  title = {A {RESTful} {API} for {Accessing} {Microbial} {Community} {Data} for {MG}-{RAST}},
  volume = {11},
  journal = {PLoS Computational Biology},
  author = {Wilke, Andreas and Bischof, Jared and Harrison, Travis and Brettin, Tom and D'Souza, Mark and Gerlach, Wolfgang and Matthews, Hunter and Paczian, Tobias and Wilkening, Jared and Glass, Elizabeth M. and Desai, Narayan Meyer, Folker},
  year = {2015}
}
  9. Wolfgang Gerlach, Wei Tang, Andreas Wilke, Dan Olson, and Folker Meyer. Container orchestration for scientific workflows. 2015 IEEE International conference on cloud engineering. 2015. IEEE.
    BibTeX 
    @inproceedings{gerlach_container_2015,
  title = {Container orchestration for scientific workflows},
  booktitle = {2015 {IEEE} {International} conference on cloud engineering},
  publisher = {IEEE},
  author = {Gerlach, Wolfgang and Tang, Wei and Wilke, Andreas and Olson, Dan and Meyer, Folker},
  year = {2015}
}
  10. Hong Xue, Otto X Cordero, Francisco M Camas, William Trimble, Folker Meyer, Julien Guglielmini, Eduardo PC Rocha, and Martin F Polz. Eco-evolutionary dynamics of episomes among ecologically cohesive bacterial populations. MBio. 2015.
    BibTeX 
    @article{xue_eco-evolutionary_2015,
  title = {Eco-evolutionary dynamics of episomes among ecologically cohesive bacterial populations},
  volume = {6},
  journal = {MBio},
  author = {Xue, Hong and Cordero, Otto X and Camas, Francisco M and Trimble, William and Meyer, Folker and Guglielmini, Julien and Rocha, Eduardo PC and Polz, Martin F},
  year = {2015},
  note = {Publisher: American Society for Microbiology 1752 N St., NW, Washington, DC}
}
  11. Kanak Mahadik, Wei Tang, Saurabh Bagchi, and Folker Meyer. Do specialized distributed frameworks for bioinformatics applications obtain better performance over generic ones?. Proceedings of the 6th ACM Conference on Bioinformatics, Computational Biology and Health Informatics. 2015.
    BibTeX 
    @inproceedings{mahadik_specialized_2015,
  title = {Do specialized distributed frameworks for bioinformatics applications obtain better performance over generic ones?},
  booktitle = {Proceedings of the 6th {ACM} {Conference} on {Bioinformatics}, {Computational} {Biology} and {Health} {Informatics}},
  author = {Mahadik, Kanak and Tang, Wei and Bagchi, Saurabh and Meyer, Folker},
  year = {2015}
}
  12. Jared Bischof, Andreas Wilke, Wolfgang Gerlach, Travis Harrison, Tobias Paczian, Wei Tang, William Trimble, Jared Wilkening, Narayan Desai, and Folker Meyer. Shock: Active Storage for Multicloud Streaming Data Analysis. 2015 IEEE/ACM 2nd International Symposium on Big Data Computing (BDC). 2015. IEEE.
    BibTeX 
    @inproceedings{bischof_shock_2015,
  title = {Shock: {Active} {Storage} for {Multicloud} {Streaming} {Data} {Analysis}},
  volume = {1},
  booktitle = {2015 {IEEE}/{ACM} 2nd {International} {Symposium} on {Big} {Data} {Computing} ({BDC})},
  publisher = {IEEE},
  author = {Bischof, Jared and Wilke, Andreas and Gerlach, Wolfgang and Harrison, Travis and Paczian, Tobias and Tang, Wei and Trimble, William and Wilkening, Jared and Desai, Narayan and Meyer, Folker},
  year = {2015},
  note = {Issue: 1}
}
  13. Elizabeth M Glass and Folker Meyer. MG-RAST, a metagenomics service for the analysis of microbial community structure and function. Hydrocarbon and Lipid Microbiology Protocols. 2015. Springer, Berlin, Heidelberg.
    BibTeX 
    @incollection{glass_mg-rast_2015,
  title = {{MG}-{RAST}, a metagenomics service for the analysis of microbial community structure and function},
  booktitle = {Hydrocarbon and {Lipid} {Microbiology} {Protocols}},
  publisher = {Springer, Berlin, Heidelberg},
  author = {Glass, Elizabeth M and Meyer, Folker},
  year = {2015}
}
  14. Emma L Aronson, Folker Meyer, Aaron Ian Packman, and Emilio Mayorga. Barriers and potential solutions for Critical Zone data integration between environmental genomics and the geosciences. AGU Fall Meeting Abstracts. 2015.
    BibTeX 
    @inproceedings{aronson_barriers_2015,
  title = {Barriers and potential solutions for {Critical} {Zone} data integration between environmental genomics and the geosciences},
  volume = {2015},
  booktitle = {{AGU} {Fall} {Meeting} {Abstracts}},
  author = {Aronson, Emma L and Meyer, Folker and Packman, Aaron Ian and Mayorga, Emilio},
  year = {2015}
}
  15. Lynette Hirschman, Peter Sterk, Dawn Field, John Wooley, Guy Cochrane, Jack Gilbert, Eugene Kolker, Nikos Kyrpides, Folker Meyer, Ilene Mizrachi, Folker Meyer, and others. Meeting Report:“Metagenomics, Metadata and Meta-analysis”(M3) Special Interest Group at ISMB 2009. Standards in Genomic Sciences. 2015.
    BibTeX 
    @article{hirschman_meeting_2015-1,
  title = {Meeting {Report}:“{Metagenomics}, {Metadata} and {Meta}-analysis”({M3}) {Special} {Interest} {Group} at {ISMB} 2009},
  volume = {2},
  journal = {Standards in Genomic Sciences},
  author = {Hirschman, Lynette and Sterk, Peter and Field, Dawn and Wooley, John and Cochrane, Guy and Gilbert, Jack and Kolker, Eugene and Kyrpides, Nikos and Meyer, Folker and Mizrachi, Ilene and Meyer, Folker and {others}},
  year = {2015}
}

2014

  1. L. Costantino, S. K. Sotiriou, J. K. Rantala, Simon. Magin, E. Mladenov, T. Helleday, J. E. Haber, G. Iliakis, O. P. Kallioniemi, and T. D. Halazonetis. Break-Induced Replication Repair of Damaged Forks Induces Genomic Duplications in Human Cells. Science. 2014. [doi] [url]
    BibTeX 
    @article{RN594,
  author = {Costantino, L. and Sotiriou, S. K. and Rantala, J. K. and Magin, Simon. and Mladenov, E. and Helleday, T. and Haber, J. E. and Iliakis, G. and Kallioniemi, O. P. and Halazonetis, T. D.},
  title = {Break-Induced Replication Repair of Damaged Forks Induces Genomic Duplications in Human Cells},
  journal = {Science},
  volume = {343},
  number = {6166},
  pages = {88-91},
  note = {282HR
  Times Cited:0
  Cited References Count:29},
  keywords = {oncogene-induced senescence
  DNA-polymerase delta
  cancer development
  instability
  stability
  complex
  yeast},
  issn = {0036-8075},
  doi = {DOI 10.1126/science.1243211},
  url = {://WOS:000329162000054},
  year = {2014},
  type = {Journal Article}
}
</pre>
</details>


</li>

  2. 




 K. M. Handley,  D. Bartels,  E. J. O’Loughlin,  K. H. Williams,  W. L. Trimble,  K. Skinner,  J. A. Gilbert,  N. Desai,  E. M. Glass,  T. Paczian,  A. Wilke,  D. Antonopoulos,  K. M. Kemner, and  Folker Meyer.

The complete genome sequence for putative H(2)- and S-oxidizer Candidatus Sulfuricurvum sp., assembled de novo from an aquifer-derived metagenome.


  Environ Microbiol.
  


2014.



  [doi]


[url]




    
  BibTeX

  
    @article{handley_complete_2014,
  title = {The complete genome sequence for putative {H}(2)- and {S}-oxidizer {Candidatus} {Sulfuricurvum} sp., assembled de novo from an aquifer-derived metagenome},
  volume = {16},
  url = {https://www.ncbi.nlm.nih.gov/pubmed/24628880},
  doi = {10.1111/1462-2920.12453},
  journal = {Environ Microbiol},
  author = {Handley, K. M. and Bartels, D. and O'Loughlin, E. J. and Williams, K. H. and Trimble, W. L. and Skinner, K. and Gilbert, J. A. and Desai, N. and Glass, E. M. and Paczian, T. and Wilke, A. and Antonopoulos, D. and Kemner, K. M. and Meyer, Folker},
  year = {2014},
  note = {Type: Journal Article}
}

    

    



    3. 

  3. 




 E. M. Glass,  Y. Dribinsky,  P. Yilmaz,  H. Levin,  R. Van Pelt,  D. Wendel,  A. Wilke,  J. A. Eisen,  S. Huse,  A. Shipanova,  M. Sogin,  J. Stajich,  R. Knight,  Folker Meyer, and  L. M. Schriml.

MIxS-BE: a MIxS extension defining a minimum information standard for sequence data from the built environment.


  ISME J.
  


2014.



  [doi]


[url]




    
  BibTeX

  
    @article{glass_mixs-be_2014,
  title = {{MIxS}-{BE}: a {MIxS} extension defining a minimum information standard for sequence data from the built environment},
  volume = {8},
  url = {https://www.ncbi.nlm.nih.gov/pubmed/24152717},
  doi = {10.1038/ismej.2013.176},
  journal = {ISME J},
  author = {Glass, E. M. and Dribinsky, Y. and Yilmaz, P. and Levin, H. and Van Pelt, R. and Wendel, D. and Wilke, A. and Eisen, J. A. and Huse, S. and Shipanova, A. and Sogin, M. and Stajich, J. and Knight, R. and Meyer, Folker and Schriml, L. M.},
  year = {2014},
  note = {Type: Journal Article}
}

    

    



    4. 

  4. 




 D. Field,  P. Sterk,  R. Kottmann,  J. W. De Smet,  L. Amaral-Zettler,  G. Cochrane,  J. R. Cole,  N. Davies,  P. Dawyndt,  G. M. Garrity,  J. A. Gilbert,  F. O. Glockner,  L. Hirschman,  H. P. Klenk,  R. Knight,  N. Kyrpides,  Folker Meyer,  I. Karsch-Mizrachi,  N. Morrison,  R. Robbins,  I. San Gil,  S. Sansone,  L. Schriml,  T. Tatusova,  D. Ussery,  P. Yilmaz,  O. White,  J. Wooley, and  G. Caporaso.

Genomic standards consortium projects.


  Stand Genomic Sci.
  


2014.



  [doi]


[url]




    
  BibTeX

  
    @article{field_genomic_2014,
  title = {Genomic standards consortium projects},
  volume = {9},
  url = {https://www.ncbi.nlm.nih.gov/pubmed/25197446},
  doi = {10.4056/sigs.5559680},
  journal = {Stand Genomic Sci},
  author = {Field, D. and Sterk, P. and Kottmann, R. and De Smet, J. W. and Amaral-Zettler, L. and Cochrane, G. and Cole, J. R. and Davies, N. and Dawyndt, P. and Garrity, G. M. and Gilbert, J. A. and Glockner, F. O. and Hirschman, L. and Klenk, H. P. and Knight, R. and Kyrpides, N. and Meyer, Folker and Karsch-Mizrachi, I. and Morrison, N. and Robbins, R. and San Gil, I. and Sansone, S. and Schriml, L. and Tatusova, T. and Ussery, D. and Yilmaz, P. and White, O. and Wooley, J. and Caporaso, G.},
  year = {2014},
  note = {Type: Journal Article}
}

    

    



    5. 

  5. 




 J. Bischof,  T. Harrison,  T. Paczian,  E. Glass,  A. Wilke, and  Folker Meyer.

Metazen - metadata capture for metagenomes.


  Stand Genomic Sci.
  


2014.



  [doi]


[url]




    
  BibTeX

  
    @article{bischof_metazen_2014,
  title = {Metazen - metadata capture for metagenomes},
  volume = {9},
  url = {http://www.ncbi.nlm.nih.gov/pubmed/25780508},
  doi = {10.1186/1944-3277-9-18},
  journal = {Stand Genomic Sci},
  author = {Bischof, J. and Harrison, T. and Paczian, T. and Glass, E. and Wilke, A. and Meyer, Folker},
  year = {2014},
  note = {Type: Journal Article}
}

    

    



    6. 

  6. 




 T. Thomas,  J. Gilbert, and  Folker Meyer.

123 of Metagenomics.


  Encyclopedia of Metagenomics.
  


2014.

  Springer New York.







    
  BibTeX

  
    @incollection{thomas_123_2014,
  title = {123 of {Metagenomics}},
  booktitle = {Encyclopedia of {Metagenomics}},
  publisher = {Springer New York},
  author = {Thomas, T. and Gilbert, J. and Meyer, Folker},
  year = {2014}
}

    

    



    7. 

  7. 




 Sarah Owens,  Kevin Keegan,  Folker Meyer, and  William Trimble.

Characterizing Sequencing Samples with k-mer Spectra for Good and Evil.


  Journal of biomolecular techniques: JBT.
  


2014.







    
  BibTeX

  
    @article{owens_characterizing_2014,
  title = {Characterizing {Sequencing} {Samples} with k-mer {Spectra} for {Good} and {Evil}},
  volume = {25},
  journal = {Journal of biomolecular techniques: JBT},
  author = {Owens, Sarah and Keegan, Kevin and Meyer, Folker and Trimble, William},
  year = {2014},
  note = {Publisher: The Association of Biomolecular Resource Facilities}
}

    

    



    8. 

  8. 




 Wei Tang,  Jared Bischof,  Narayan Desai,  Kanak Mahadik,  Wolfgang Gerlach,  Travis Harrison,  Andreas Wilke, and  Folker Meyer.

Workload characterization for MG-RAST metagenomic data analytics service in the cloud.


  2014 IEEE International Conference on Big Data (Big Data).
  


2014.

  IEEE.







    
  BibTeX

  
    @inproceedings{tang_workload_2014,
  title = {Workload characterization for {MG}-{RAST} metagenomic data analytics service in the cloud},
  booktitle = {2014 {IEEE} {International} {Conference} on {Big} {Data} ({Big} {Data})},
  publisher = {IEEE},
  author = {Tang, Wei and Bischof, Jared and Desai, Narayan and Mahadik, Kanak and Gerlach, Wolfgang and Harrison, Travis and Wilke, Andreas and Meyer, Folker},
  year = {2014}
}

    

    



    9. 

  9. 




 Wei Tang,  Jonathan Jenkins,  Folker Meyer,  Robert Ross,  Rajkumar Kettimuthu,  Linda Winkler,  Xi Yang,  Thomas Lehman, and  Narayan Desai.

Data-aware resource scheduling for multicloud workflows: A fine-grained simulation approach.


  2014 IEEE 6th International Conference on Cloud Computing Technology and Science.
  


2014.

  IEEE.







    
  BibTeX

  
    @inproceedings{tang_data-aware_2014,
  title = {Data-aware resource scheduling for multicloud workflows: {A} fine-grained simulation approach},
  booktitle = {2014 {IEEE} 6th {International} {Conference} on {Cloud} {Computing} {Technology} and {Science}},
  publisher = {IEEE},
  author = {Tang, Wei and Jenkins, Jonathan and Meyer, Folker and Ross, Robert and Kettimuthu, Rajkumar and Winkler, Linda and Yang, Xi and Lehman, Thomas and Desai, Narayan},
  year = {2014}
}

    

    



    10. 

  10. 




 Wolfgang Gerlach,  Wei Tang,  Kevin Keegan,  Travis Harrison,  Andreas Wilke,  Jared Bischof,  Mark D’Souza,  Scott Devoid,  Daniel Murphy-Olson,  Narayan Desai, and  Folker Meyer.

Skyport-container-based execution environment management for multi-cloud scientific workflows.


  2014 5th International Workshop on Data-Intensive Computing in the Clouds.
  


2014.

  IEEE.







    
  BibTeX

  
    @inproceedings{gerlach_skyport-container-based_2014,
  title = {Skyport-container-based execution environment management for multi-cloud scientific workflows},
  booktitle = {2014 5th {International} {Workshop} on {Data}-{Intensive} {Computing} in the {Clouds}},
  publisher = {IEEE},
  author = {Gerlach, Wolfgang and Tang, Wei and Keegan, Kevin and Harrison, Travis and Wilke, Andreas and Bischof, Jared and D'Souza, Mark and Devoid, Scott and Murphy-Olson, Daniel and Desai, Narayan and Meyer, Folker},
  year = {2014}
}

    

    



    11. 

  11. 




 Jared Bischof,  Travis Harrison,  Tobias Paczian,  Elizabeth Glass,  Andreas Wilke, and  Folker Meyer.

Metazen - Metadata Capture for Metagenomes.


  Standards in Genomic Science.
  


2014.







    
  BibTeX

  
    @article{bischof_metazen_2014-1,
  title = {Metazen - {Metadata} {Capture} for {Metagenomes}},
  volume = {9},
  journal = {Standards in Genomic Science},
  author = {Bischof, Jared and Harrison, Travis and Paczian, Tobias and Glass, Elizabeth and Wilke, Andreas and Meyer, Folker},
  year = {2014}
}

    

    



    12. 

  12. 




 Kim M Handley,  Daniela Bartels,  Edward J O’Loughlin,  Kenneth H Williams,  William L Trimble,  Kelly Skinner,  Jack A Gilbert,  Narayan Desai,  Elizabeth M Glass,  Tobias Paczian, and others.

The complete genome sequence for putative H 2-and S-oxidizer C andidatus Sulfuricurvum sp., assembled de novo from an aquifer-derived metagenome.


  Environmental microbiology.
  


2014.







    
  BibTeX

  
    @article{handley_complete_2014-2,
  title = {The complete genome sequence for putative {H} 2-and {S}-oxidizer {C} andidatus {Sulfuricurvum} sp., assembled de novo from an aquifer-derived metagenome},
  volume = {16},
  journal = {Environmental microbiology},
  author = {Handley, Kim M and Bartels, Daniela and O'Loughlin, Edward J and Williams, Kenneth H and Trimble, William L and Skinner, Kelly and Gilbert, Jack A and Desai, Narayan and Glass, Elizabeth M and Paczian, Tobias and {others}},
  year = {2014}
}

    

    



    13. 

  13. 




 N. Davies,  D. Field,  L. Amaral-Zettler,  M. S. Clark,  J. Deck,  A. Drummond,  D. P. Faith,  J. Geller,  J. Gilbert,  F. O. Glockner,  P. R. Hirsch,  J. A. Leong,  C. Meyer,  M. Obst,  S. Planes,  C. Scholin,  A. P. Vogler,  R. D. Gates,  R. Toonen,  V. Berteaux-Lecellier,  M. Barbier,  K. Barker,  S. Bertilsson,  M. Bicak,  M. J. Bietz,  J. Bobe,  L. Bodrossy,  A. Borja,  J. Coddington,  J. Fuhrman,  G. Gerdts,  R. Gillespie,  K. Goodwin,  P. C. Hanson,  J. M. Hero,  D. Hoekman,  J. Jansson,  C. Jeanthon,  R. Kao,  A. Klindworth,  R. Knight,  R. Kottmann,  M. S. Koo,  G. Kotoulas,  A. J. Lowe,  V. T. Marteinsson,  Folker Meyer,  N. Morrison,  D. D. Myrold,  E. Pafilis,  S. Parker,  J. J. Parnell,  P. N. Polymenakou,  S. Ratnasingham,  G. K. Roderick,  N. Rodriguez-Ezpeleta,  K. Schonrogge,  N. Simon,  N. J. Valette-Silver,  Y. P. Springer,  G. N. Stone,  S. Stones-Havas,  S. A. Sansone,  K. M. Thibault,  P. Wecker,  A. Wichels,  J. C. Wooley,  T. Yahara,  A. Zingone, and  G. Os COS.

The founding charter of the Genomic Observatories Network.


  Gigascience.
  


2014.



  [doi]


[url]




    
  BibTeX

  
    @article{davies_founding_2014-1,
  title = {The founding charter of the {Genomic} {Observatories} {Network}},
  volume = {3},
  url = {https://www.ncbi.nlm.nih.gov/pubmed/24606731},
  doi = {10.1186/2047-217X-3-2},
  journal = {Gigascience},
  author = {Davies, N. and Field, D. and Amaral-Zettler, L. and Clark, M. S. and Deck, J. and Drummond, A. and Faith, D. P. and Geller, J. and Gilbert, J. and Glockner, F. O. and Hirsch, P. R. and Leong, J. A. and Meyer, C. and Obst, M. and Planes, S. and Scholin, C. and Vogler, A. P. and Gates, R. D. and Toonen, R. and Berteaux-Lecellier, V. and Barbier, M. and Barker, K. and Bertilsson, S. and Bicak, M. and Bietz, M. J. and Bobe, J. and Bodrossy, L. and Borja, A. and Coddington, J. and Fuhrman, J. and Gerdts, G. and Gillespie, R. and Goodwin, K. and Hanson, P. C. and Hero, J. M. and Hoekman, D. and Jansson, J. and Jeanthon, C. and Kao, R. and Klindworth, A. and Knight, R. and Kottmann, R. and Koo, M. S. and Kotoulas, G. and Lowe, A. J. and Marteinsson, V. T. and Meyer, Folker and Morrison, N. and Myrold, D. D. and Pafilis, E. and Parker, S. and Parnell, J. J. and Polymenakou, P. N. and Ratnasingham, S. and Roderick, G. K. and Rodriguez-Ezpeleta, N. and Schonrogge, K. and Simon, N. and Valette-Silver, N. J. and Springer, Y. P. and Stone, G. N. and Stones-Havas, S. and Sansone, S. A. and Thibault, K. M. and Wecker, P. and Wichels, A. and Wooley, J. C. and Yahara, T. and Zingone, A. and COS, G. Os},
  year = {2014},
  note = {Type: Journal Article}
}

    

    



    14. 

  14. 




 N. C. Kyrpides,  P. Hugenholtz,  J. A. Eisen,  T. Woyke,  M. Goker,  C. T. Parker,  R. Amann,  B. J. Beck,  P. S. Chain,  J. Chun,  R. R. Colwell,  A. Danchin,  P. Dawyndt,  T. Dedeurwaerdere,  E. F. DeLong,  J. C. Detter,  P. De Vos,  T. J. Donohue,  X. Z. Dong,  D. S. Ehrlich,  C. Fraser,  R. Gibbs,  J. Gilbert,  P. Gilna,  F. O. Glockner,  J. K. Jansson,  J. D. Keasling,  R. Knight,  D. Labeda,  A. Lapidus,  J. S. Lee,  W. J. Li,  J. Ma,  V. Markowitz,  E. R. Moore,  M. Morrison,  Folker Meyer,  K. E. Nelson,  M. Ohkuma,  C. A. Ouzounis,  N. Pace,  J. Parkhill,  N. Qin,  R. Rossello-Mora,  J. Sikorski,  D. Smith,  M. Sogin,  R. Stevens,  U. Stingl,  K. Suzuki,  D. Taylor,  J. M. Tiedje,  B. Tindall,  M. Wagner,  G. Weinstock,  J. Weissenbach,  O. White,  J. Wang,  L. Zhang,  Y. G. Zhou,  D. Field,  W. B. Whitman,  G. M. Garrity, and  H. P. Klenk.

Genomic encyclopedia of bacteria and archaea: sequencing a myriad of type strains.


  PLoS Biol.
  


2014.



  [doi]


[url]




    
  BibTeX

  
    @article{kyrpides_genomic_2014-1,
  title = {Genomic encyclopedia of bacteria and archaea: sequencing a myriad of type strains},
  volume = {12},
  url = {https://www.ncbi.nlm.nih.gov/pubmed/25093819},
  doi = {10.1371/journal.pbio.1001920},
  journal = {PLoS Biol},
  author = {Kyrpides, N. C. and Hugenholtz, P. and Eisen, J. A. and Woyke, T. and Goker, M. and Parker, C. T. and Amann, R. and Beck, B. J. and Chain, P. S. and Chun, J. and Colwell, R. R. and Danchin, A. and Dawyndt, P. and Dedeurwaerdere, T. and DeLong, E. F. and Detter, J. C. and De Vos, P. and Donohue, T. J. and Dong, X. Z. and Ehrlich, D. S. and Fraser, C. and Gibbs, R. and Gilbert, J. and Gilna, P. and Glockner, F. O. and Jansson, J. K. and Keasling, J. D. and Knight, R. and Labeda, D. and Lapidus, A. and Lee, J. S. and Li, W. J. and Ma, J. and Markowitz, V. and Moore, E. R. and Morrison, M. and Meyer, Folker and Nelson, K. E. and Ohkuma, M. and Ouzounis, C. A. and Pace, N. and Parkhill, J. and Qin, N. and Rossello-Mora, R. and Sikorski, J. and Smith, D. and Sogin, M. and Stevens, R. and Stingl, U. and Suzuki, K. and Taylor, D. and Tiedje, J. M. and Tindall, B. and Wagner, M. and Weinstock, G. and Weissenbach, J. and White, O. and Wang, J. and Zhang, L. and Zhou, Y. G. and Field, D. and Whitman, W. B. and Garrity, G. M. and Klenk, H. P.},
  year = {2014},
  note = {Type: Journal Article},
  keywords = {DNA, Archaea/classification/genetics Bacteria/classification/genetics Databases, Archaeal/*genetics Genome, Bacterial/*genetics *Genomics Phylogeny *Sequence Analysis, Genetic Genome}
}

    

    



    15. 

  15. 




 David Myrold,  Mark Bailey,  Janet Jansson,  Folker Meyer,  James Tiedje,  Eric Triplett, and  Timothy Vogel.

Terragenome-The Soil Metagenome Network.



2014.







    
  BibTeX

  
    @article{myrold_terragenome-soil_2014-1,
  title = {Terragenome-{The} {Soil} {Metagenome} {Network}},
  author = {Myrold, David and Bailey, Mark and Jansson, Janet and Meyer, Folker and Tiedje, James and Triplett, Eric and Vogel, Timothy},
  year = {2014}
}

    

    



    16. 

  16. 




 A. K. Aufdenkampe,  E. Mayorga,  J. S. Horsburgh,  K. A. Lehnert,  I. Zaslavsky,  Jr.  D. W. Valentine,  S. M. Richard,  R. Cheetham,  Folker Meyer,  C. Henry,  G. Berg-Cross,  A. I. Packman, and  E. L. Aronson.

The community-driven BiG CZ software system for integration and analysis of bio- and geoscience data in the critical zone.


  AGU Fall Meeting Abstracts.
  


2014.







    
  BibTeX

  
    @inproceedings{aufdenkampe_community-driven_2014-1,
  title = {The community-driven {BiG} {CZ} software system for integration and analysis of bio- and geoscience data in the critical zone},
  volume = {2014},
  booktitle = {{AGU} {Fall} {Meeting} {Abstracts}},
  author = {Aufdenkampe, A. K. and Mayorga, E. and Horsburgh, J. S. and Lehnert, K. A. and Zaslavsky, I. and Valentine, D. W., Jr. and Richard, S. M. and Cheetham, R. and Meyer, Folker and Henry, C. and Berg-Cross, G. and Packman, A. I. and Aronson, E. L.},
  year = {2014},
  keywords = {1904 Community standards, 1908 Cyberinfrastructure, 1972 Sensor web, 9805 Instruments useful in three or more fields}
}

    

    



    17. 

  17. 




 Folker Meyer.

METAGENOMICS: A GUIDE FROM SAMPLING TO DATA ANALYSIS.


  The Role of Bioinformatics in Agriculture.
  


2014.

  Apple Academic Press.







    
  BibTeX

  
    @incollection{meyer_metagenomics_2014-1,
  title = {{METAGENOMICS}: {A} {GUIDE} {FROM} {SAMPLING} {TO} {DATA} {ANALYSIS}},
  booktitle = {The {Role} of {Bioinformatics} in {Agriculture}},
  publisher = {Apple Academic Press},
  author = {Meyer, Folker},
  year = {2014}
}

    

    



    18. </ol>

    2013
    

    1. 




 Simon. Magin,  J. Saha,  M. Wang,  V. Mladenova,  N. Coym, and  G. Iliakis.

Lipofection and nucleofection of substrate plasmid can generate widely different readings of DNA end-joining efficiency in different cell lines.


  DNA repair.
  


2013.



  [doi]


[url]




      
  BibTeX

  
      @article{RN301,
  author = {Magin, Simon. and Saha, J. and Wang, M. and Mladenova, V. and Coym, N. and Iliakis, G.},
  title = {Lipofection and nucleofection of substrate plasmid can generate widely different readings of DNA end-joining efficiency in different cell lines},
  journal = {DNA repair},
  volume = {12},
  number = {2},
  pages = {148-60},
  note = {Magin, Simon
  Saha, Janapriya
  Wang, Minli
  Mladenova, Veronika
  Coym, Nadine
  Iliakis, George
  Netherlands
  DNA Repair (Amst). 2013 Feb 1;12(2):148-60. doi: 10.1016/j.dnarep.2012.11.008. Epub 2013 Jan 1.},
  issn = {1568-7856 (Electronic)
  1568-7856 (Linking)},
  doi = {10.1016/j.dnarep.2012.11.008},
  url = {http://www.ncbi.nlm.nih.gov/pubmed/23286905},
  year = {2013},
  type = {Journal Article}
}

      

      



      2. 

    2. 




 E. Mladenov,  Simon. Magin,  A. Soni, and  G. Iliakis.

DNA double-strand break repair as determinant of cellular radiosensitivity to killing and target in radiation therapy.


  Frontiers in oncology.
  


2013.



  [doi]


[url]




      
  BibTeX

  
      @article{RN318,
  author = {Mladenov, E. and Magin, Simon. and Soni, A. and Iliakis, G.},
  title = {DNA double-strand break repair as determinant of cellular radiosensitivity to killing and target in radiation therapy},
  journal = {Frontiers in oncology},
  volume = {3},
  pages = {113},
  note = {Mladenov, Emil
  Magin, Simon
  Soni, Aashish
  Iliakis, George
  Switzerland
  Front Oncol. 2013 May 10;3:113. doi: 10.3389/fonc.2013.00113. Print 2013.},
  issn = {2234-943X (Electronic)
  2234-943X (Linking)},
  doi = {10.3389/fonc.2013.00113},
  url = {http://www.ncbi.nlm.nih.gov/pubmed/23675572},
  year = {2013},
  type = {Journal Article}
}

      

      



      3. 

    3. 




 Ivana Kraiselburd,  Lucas Damián Daurelio,  María Laura Tondo,  Paz Merelo,  Adriana A. Cortadi,  Manuel Talón,  Francisco R Tadeo, and  Elena G Orellano.

The LOV Protein of Xanthomonas citri subsp. citri Plays a Significant Role in the Counteraction of Plant Immune Responses during Citrus Canker.


  PLoS ONE.
  


2013.







      
  BibTeX

  
      @article{Kraiselburd2013TheLP,
  title = {The LOV Protein of Xanthomonas citri subsp. citri Plays a Significant Role in the Counteraction of Plant Immune Responses during Citrus Canker},
  author = {Kraiselburd, Ivana and Daurelio, Lucas Dami{\'a}n and Tondo, Mar{\'i}a Laura and Merelo, Paz and Cortadi, Adriana A. and Tal{\'o}n, Manuel and Tadeo, Francisco R and Orellano, Elena G},
  journal = {PLoS ONE},
  year = {2013},
  volume = {8}
}

      

      



      4. 

    4. 




 Ricarda M. Schmithausen,  S Schulze-Geisthoevel,  F Stemmer,  G Bierbaum,  A Hoerauf,  M Exner,  I Bekeredjian-Ding, and  B Petersen.

Association of antibiotic usage with MRSA and ESBL prevalence in pig farms.


  INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY.
  


2013.







      
  BibTeX

  
      @inproceedings{schmithausen2013association,
  title = {Association of antibiotic usage with MRSA and ESBL prevalence in pig farms},
  author = {Schmithausen, Ricarda M. and Schulze-Geisthoevel, S and Stemmer, F and Bierbaum, G and Hoerauf, A and Exner, M and Bekeredjian-Ding, I and Petersen, B},
  booktitle = {INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY},
  volume = {303},
  year = {2013},
  organization = {ELSEVIER GMBH, URBAN \& FISCHER VERLAG OFFICE JENA, PO BOX 100537, 07705 JENA~…}
}

      

      



      5. 

    5. 




 D. Williams,  W. L. Trimble,  M. Shilts,  Folker Meyer, and  H. Ochman.

Rapid quantification of sequence repeats to resolve the size, structure and contents of bacterial genomes.


  BMC Genomics.
  


2013.



  [doi]


[url]




      
  BibTeX

  
      @article{williams_rapid_2013,
  title = {Rapid quantification of sequence repeats to resolve the size, structure and contents of bacterial genomes},
  volume = {14},
  url = {https://www.ncbi.nlm.nih.gov/pubmed/23924250},
  doi = {10.1186/1471-2164-14-537},
  journal = {BMC Genomics},
  author = {Williams, D. and Trimble, W. L. and Shilts, M. and Meyer, Folker and Ochman, H.},
  year = {2013},
  note = {Type: Journal Article}
}

      

      



      6. 

    6. 




 E. C. Claud,  K. P. Keegan,  J. M. Brulc,  L. Lu,  D. Bartels,  E. Glass,  E. B. Chang,  Folker Meyer, and  D. A. Antonopoulos.

Bacterial community structure and functional contributions to emergence of health or necrotizing enterocolitis in preterm infants.


  Microbiome.
  


2013.



  [doi]


[url]




      
  BibTeX

  
      @article{claud_bacterial_2013,
  title = {Bacterial community structure and functional contributions to emergence of health or necrotizing enterocolitis in preterm infants},
  volume = {1},
  url = {https://www.ncbi.nlm.nih.gov/pubmed/24450928},
  doi = {10.1186/2049-2618-1-20},
  journal = {Microbiome},
  author = {Claud, E. C. and Keegan, K. P. and Brulc, J. M. and Lu, L. and Bartels, D. and Glass, E. and Chang, E. B. and Meyer, Folker and Antonopoulos, D. A.},
  year = {2013},
  note = {Type: Journal Article}
}

      

      



      7. 

    7. 




 James Vincent,  A Wilke,  J Bischof,  N Desai,  M D’Souza,  E Glass,  K Handley,  T Harrison,  A Howe,  K Keegan, and  Folker Meyer.

Analysis of Shotgun Metagenomes with MG-RAST.


  Journal of Biomolecular Techniques: JBT.
  


2013.







      
  BibTeX

  
      @article{vincent_analysis_2013,
  title = {Analysis of {Shotgun} {Metagenomes} with {MG}-{RAST}},
  volume = {24},
  journal = {Journal of Biomolecular Techniques: JBT},
  author = {Vincent, James and Wilke, A and Bischof, J and Desai, N and D'Souza, M and Glass, E and Handley, K and Harrison, T and Howe, A and Keegan, K and Meyer, Folker},
  year = {2013},
  note = {Publisher: The Association of Biomolecular Resource Facilities}
}

      

      



      8. 

    8. 




 Andreas Wilke,  E Glass,  Jared Bischof,  Daniel Braithwaite,  M Souza, and  Wolfgang Gerlach.

MG-RAST technical report and manual for version 3.3. 6–Rev 1.


  Lemont, IL: Argonne National Laboratory.
  


2013.







      
  BibTeX

  
      @article{wilke_mg-rast_2013,
  title = {{MG}-{RAST} technical report and manual for version 3.3. 6–{Rev} 1},
  journal = {Lemont, IL: Argonne National Laboratory},
  author = {Wilke, Andreas and Glass, E and Bischof, Jared and Braithwaite, Daniel and Souza, M and Gerlach, Wolfgang},
  year = {2013}
}

      

      



      9. 

    9. 




 Andreas Wilke,  Elizabeth M Glass,  Daniela Bartels,  Jared Bischof,  Daniel Braithwaite,  Mark D’Souza,  Wolfgang Gerlach,  Travis Harrison,  Kevin Keegan,  Hunter Matthews, and  Folker Meyer.

A metagenomics portal for a democratized sequencing world.


  Methods in Enzymology.
  


2013.

  Academic Press.







      
  BibTeX

  
      @incollection{wilke_metagenomics_2013,
  title = {A metagenomics portal for a democratized sequencing world},
  volume = {531},
  booktitle = {Methods in {Enzymology}},
  publisher = {Academic Press},
  author = {Wilke, Andreas and Glass, Elizabeth M and Bartels, Daniela and Bischof, Jared and Braithwaite, Daniel and D’Souza, Mark and Gerlach, Wolfgang and Harrison, Travis and Keegan, Kevin and Matthews, Hunter and Meyer, Folker},
  year = {2013}
}

      

      



      10. 

    10. 




 Elizabeth M. Glass,  Yekaterina Dribinsky,  Pelin Yilamz,  Folker Meyer, and  Lynn M. Schriml.

MIxS-BE: a MIxS extension defining a minimum information standard for sequence data from the built environment.


  ISME.
  


2013.







      
  BibTeX

  
      @inproceedings{elizabeth_m_glass_mixs-be_2013,
  title = {{MIxS}-{BE}: a {MIxS} extension defining a minimum information standard for sequence data from the built environment},
  booktitle = {{ISME}},
  author = {Glass, Elizabeth M. and Dribinsky, Yekaterina and Yilamz, Pelin and Meyer, Folker and Schriml, Lynn M.},
  year = {2013}
}

      

      



      11. 

    11. 




 Wei Tang,  Jared Wilkening,  Narayan Desai,  Wolfgang Gerlach,  Andreas Wilke, and  Folker Meyer.

A Scalable Data Analysis Platform for Metagenomics.


  2013 IEEE International Conference on Big Data.
  


2013.







      
  BibTeX

  
      @inproceedings{tang_scalable_2013,
  title = {A {Scalable} {Data} {Analysis} {Platform} for {Metagenomics}},
  booktitle = {2013 {IEEE} {International} {Conference} on {Big} {Data}},
  author = {Tang, Wei and Wilkening, Jared and Desai, Narayan and Gerlach, Wolfgang and Wilke, Andreas and Meyer, Folker},
  year = {2013}
}

      

      



      12. 

    12. 




 Wei Tang,  Jared Wilkening,  Jared Bischof,  Wolfgang Gerlach,  Andreas Wilke,  Narayan Desai, and  Folker Meyer.

Building Scalable Data Management and Analysis Infrastructure for Metagenomics.



2013.







      
  BibTeX

  
      @article{tang_building_2013,
  title = {Building {Scalable} {Data} {Management} and {Analysis} {Infrastructure} for {Metagenomics}},
  author = {Tang, Wei and Wilkening, Jared and Bischof, Jared and Gerlach, Wolfgang and Wilke, Andreas and Desai, Narayan and Meyer, Folker},
  year = {2013}
}

      

      



      13. 

    13. 




 Folker Meyer30.

BIG DATA IN BIOLOGY: PITFALLS WHEN USING SHOTGUN METAGENOMICS TO DEFINE HYPOTHESES ABOUT MICROBIAL COMMUNITIES.


  The Science and Applications of Microbial Genomics: Workshop Summary.
  


2013.

  National Academies Press.







      
  BibTeX

  
      @inproceedings{meyer30_big_2013,
  title = {{BIG} {DATA} {IN} {BIOLOGY}: {PITFALLS} {WHEN} {USING} {SHOTGUN} {METAGENOMICS} {TO} {DEFINE} {HYPOTHESES} {ABOUT} {MICROBIAL} {COMMUNITIES}},
  booktitle = {The {Science} and {Applications} of {Microbial} {Genomics}: {Workshop} {Summary}},
  publisher = {National Academies Press},
  author = {Meyer30, Folker},
  year = {2013}
}

      

      



      14. 

    14. 




 V. B. Young,  L. H. Raffals,  S. M. Huse,  M. Vital,  D. Dai,  P. D. Schloss,  J. M. Brulc,  D. A. Antonopoulos,  R. L. Arrieta,  J. H. Kwon,  K. G. Reddy,  N. A. Hubert,  S. L. Grim,  J. H. Vineis,  S. Dalal,  H. G. Morrison,  A. M. Eren,  Folker Meyer,  T. M. Schmidt,  J. M. Tiedje,  E. B. Chang, and  M. L. Sogin.

Multiphasic analysis of the temporal development of the distal gut microbiota in patients following ileal pouch anal anastomosis.


  Microbiome.
  


2013.



  [doi]


[url]




      
  BibTeX

  
      @article{young_multiphasic_2013-1,
  title = {Multiphasic analysis of the temporal development of the distal gut microbiota in patients following ileal pouch anal anastomosis},
  volume = {1},
  url = {https://www.ncbi.nlm.nih.gov/pubmed/24451366},
  doi = {10.1186/2049-2618-1-9},
  journal = {Microbiome},
  author = {Young, V. B. and Raffals, L. H. and Huse, S. M. and Vital, M. and Dai, D. and Schloss, P. D. and Brulc, J. M. and Antonopoulos, D. A. and Arrieta, R. L. and Kwon, J. H. and Reddy, K. G. and Hubert, N. A. and Grim, S. L. and Vineis, J. H. and Dalal, S. and Morrison, H. G. and Eren, A. M. and Meyer, Folker and Schmidt, T. M. and Tiedje, J. M. and Chang, E. B. and Sogin, M. L.},
  year = {2013},
  note = {Type: Journal Article}
}

      

      



    

    2012
    

    1. 




 Ivana Kraiselburd,  Analía I. Alet,  María Laura Tondo,  Silvana Petrocelli,  Lucas Damián Daurelio,  Jesica Monzón,  Oscar Adolfo Ruiz,  Aba Losi, and  Elena G Orellano.

A LOV Protein Modulates the Physiological Attributes of Xanthomonas axonopodis pv. citri Relevant for Host Plant Colonization.


  PLoS ONE.
  


2012.







      
  BibTeX

  
      @article{Kraiselburd2012ALP,
  title = {A LOV Protein Modulates the Physiological Attributes of Xanthomonas axonopodis pv. citri Relevant for Host Plant Colonization},
  author = {Kraiselburd, Ivana and Alet, Anal{\'i}a I. and Tondo, Mar{\'i}a Laura and Petrocelli, Silvana and Daurelio, Lucas Dami{\'a}n and Monz{\'o}n, Jesica and Ruiz, Oscar Adolfo and Losi, Aba and Orellano, Elena G},
  journal = {PLoS ONE},
  year = {2012},
  volume = {7}
}

      

      



      2. 

    2. 




 Ricarda M. Schmithausen,  V Raab, and  B Petersen.

MRSA in Mensch, Tier und Lebensmitteln–Eine Übersicht.


  Aktuelle Ernährungsmedizin.
  


2012.







      
  BibTeX

  
      @article{schmithausen2012mrsa,
  title = {MRSA in Mensch, Tier und Lebensmitteln--Eine {\"U}bersicht},
  author = {Schmithausen, Ricarda M. and Raab, V and Petersen, B},
  journal = {Aktuelle Ern{\"a}hrungsmedizin},
  volume = {37},
  year = {2012}
}

      

      



      3. 

    3. 




 A. Wilke,  T. Harrison,  J. Wilkening,  D. Field,  E. M. Glass,  N. Kyrpides,  K. Mavrommatis, and  Folker Meyer.

The M5nr: a novel non-redundant database containing protein sequences and annotations from multiple sources and associated tools.


  BMC Bioinformatics.
  


2012.



  [doi]


[url]




      
  BibTeX

  
      @article{wilke_m5nr_2012,
  title = {The {M5nr}: a novel non-redundant database containing protein sequences and annotations from multiple sources and associated tools},
  volume = {13},
  url = {http://www.ncbi.nlm.nih.gov/pubmed/22720753},
  doi = {10.1186/1471-2105-13-141},
  journal = {BMC Bioinformatics},
  author = {Wilke, A. and Harrison, T. and Wilkening, J. and Field, D. and Glass, E. M. and Kyrpides, N. and Mavrommatis, K. and Meyer, Folker},
  year = {2012},
  note = {Type: Journal Article}
}

      

      



      4. 

    4. 




 W. L. Trimble,  K. P. Keegan,  M. D’Souza,  A. Wilke,  J. Wilkening,  J. Gilbert, and  Folker Meyer.

Short-read reading-frame predictors are not created equal: sequence error causes loss of signal.


  BMC Bioinformatics.
  


2012.



  [doi]


[url]




      
  BibTeX

  
      @article{trimble_short-read_2012,
  title = {Short-read reading-frame predictors are not created equal: sequence error causes loss of signal},
  volume = {13},
  url = {http://www.ncbi.nlm.nih.gov/pubmed/22839106},
  doi = {10.1186/1471-2105-13-183},
  journal = {BMC Bioinformatics},
  author = {Trimble, W. L. and Keegan, K. P. and D'Souza, M. and Wilke, A. and Wilkening, J. and Gilbert, J. and Meyer, Folker},
  year = {2012},
  note = {Type: Journal Article}
}

      

      



      5. 

    5. 




 T. Thomas,  J. Gilbert, and  Folker Meyer.

Metagenomics - a guide from sampling to data analysis.


  Microb Inform Exp.
  


2012.



  [doi]


[url]




      
  BibTeX

  
      @article{thomas_metagenomics_2012,
  title = {Metagenomics - a guide from sampling to data analysis},
  volume = {2},
  url = {http://www.ncbi.nlm.nih.gov/pubmed/22587947},
  doi = {10.1186/2042-5783-2-3},
  journal = {Microb Inform Exp},
  author = {Thomas, T. and Gilbert, J. and Meyer, Folker},
  year = {2012},
  note = {Type: Journal Article}
}

      

      



      6. 

    6. 




 D. McDonald,  J. C. Clemente,  J. Kuczynski,  J. R. Rideout,  J. Stombaugh,  D. Wendel,  A. Wilke,  S. Huse,  J. Hufnagle,  Folker Meyer,  R. Knight, and  J. G. Caporaso.

The Biological Observation Matrix (BIOM) format or: how I learned to stop worrying and love the ome-ome.


  Gigascience.
  


2012.



  [doi]


[url]




      
  BibTeX

  
      @article{mcdonald_biological_2012,
  title = {The {Biological} {Observation} {Matrix} ({BIOM}) format or: how {I} learned to stop worrying and love the ome-ome},
  volume = {1},
  url = {https://www.ncbi.nlm.nih.gov/pubmed/23587224},
  doi = {10.1186/2047-217X-1-7},
  journal = {Gigascience},
  author = {McDonald, D. and Clemente, J. C. and Kuczynski, J. and Rideout, J. R. and Stombaugh, J. and Wendel, D. and Wilke, A. and Huse, S. and Hufnagle, J. and Meyer, Folker and Knight, R. and Caporaso, J. G.},
  year = {2012},
  note = {Type: Journal Article}
}

      

      



      7. 

    7. 




 R. Knight,  J. Jansson,  D. Field,  N. Fierer,  N. Desai,  J. A. Fuhrman,  P. Hugenholtz,  D. van der Lelie,  Folker Meyer,  R. Stevens,  M. J. Bailey,  J. I. Gordon,  G. A. Kowalchuk, and  J. A. Gilbert.

Unlocking the potential of metagenomics through replicated experimental design.


  Nat Biotechnol.
  


2012.



  [doi]


[url]




      
  BibTeX

  
      @article{knight_unlocking_2012,
  title = {Unlocking the potential of metagenomics through replicated experimental design},
  volume = {30},
  url = {http://www.ncbi.nlm.nih.gov/pubmed/22678395},
  doi = {10.1038/nbt.2235},
  journal = {Nat Biotechnol},
  author = {Knight, R. and Jansson, J. and Field, D. and Fierer, N. and Desai, N. and Fuhrman, J. A. and Hugenholtz, P. and van der Lelie, D. and Meyer, Folker and Stevens, R. and Bailey, M. J. and Gordon, J. I. and Kowalchuk, G. A. and Gilbert, J. A.},
  year = {2012},
  note = {Type: Journal Article}
}

      

      



      8. 

    8. 




 K. P. Keegan,  W. L. Trimble,  J. Wilkening,  A. Wilke,  T. Harrison,  M. D’Souza, and  Folker Meyer.

A platform-independent method for detecting errors in metagenomic sequencing data: DRISEE.


  PLoS Comput Biol.
  


2012.



  [doi]


[url]




      
  BibTeX

  
      @article{keegan_platform-independent_2012,
  title = {A platform-independent method for detecting errors in metagenomic sequencing data: {DRISEE}},
  volume = {8},
  url = {http://www.ncbi.nlm.nih.gov/pubmed/22685393},
  doi = {10.1371/journal.pcbi.1002541},
  journal = {PLoS Comput Biol},
  author = {Keegan, K. P. and Trimble, W. L. and Wilkening, J. and Wilke, A. and Harrison, T. and D'Souza, M. and Meyer, Folker},
  year = {2012},
  note = {Type: Journal Article}
}

      

      



      9. 

    9. 




 J. A. Gilbert,  Y. Bao,  H. Wang,  S. A. Sansone,  S. C. Edmunds,  N. Morrison,  Folker Meyer,  L. M. Schriml,  N. Davies,  P. Sterk,  J. Wilkening,  G. M. Garrity,  D. Field,  R. Robbins,  D. P. Smith,  I. Mizrachi, and  C. Moreau.

Report of the 13(th) Genomic Standards Consortium Meeting, Shenzhen, China, March 4-7, 2012.


  Stand Genomic Sci.
  


2012.



  [doi]


[url]




      
  BibTeX

  
      @article{gilbert_report_2012,
  title = {Report of the 13(th) {Genomic} {Standards} {Consortium} {Meeting}, {Shenzhen}, {China}, {March} 4-7, 2012},
  volume = {6},
  url = {https://www.ncbi.nlm.nih.gov/pubmed/22768370},
  doi = {10.4056/sigs.2876184},
  journal = {Stand Genomic Sci},
  author = {Gilbert, J. A. and Bao, Y. and Wang, H. and Sansone, S. A. and Edmunds, S. C. and Morrison, N. and Meyer, Folker and Schriml, L. M. and Davies, N. and Sterk, P. and Wilkening, J. and Garrity, G. M. and Field, D. and Robbins, R. and Smith, D. P. and Mizrachi, I. and Moreau, C.},
  year = {2012},
  note = {Type: Journal Article}
}

      

      



      10. 

    10. 




 N. Desai,  D. Antonopoulos,  J. A. Gilbert,  E. M. Glass, and  Folker Meyer.

From genomics to metagenomics.


  Curr Opin Biotechnol.
  


2012.



  [doi]


[url]




      
  BibTeX

  
      @article{desai_genomics_2012,
  title = {From genomics to metagenomics},
  volume = {23},
  url = {http://www.ncbi.nlm.nih.gov/pubmed/22227326},
  doi = {10.1016/j.copbio.2011.12.017},
  journal = {Curr Opin Biotechnol},
  author = {Desai, N. and Antonopoulos, D. and Gilbert, J. A. and Glass, E. M. and Meyer, Folker},
  year = {2012},
  note = {Type: Journal Article}
}

      

      



      11. 

    11. 




 T. O. Delmont,  E. Prestat,  K. P. Keegan,  M. Faubladier,  P. Robe,  I. M. Clark,  E. Pelletier,  P. R. Hirsch,  Folker Meyer,  J. A. Gilbert,  D. Le Paslier,  P. Simonet, and  T. M. Vogel.

Structure, fluctuation and magnitude of a natural grassland soil metagenome.


  ISME J.
  


2012.



  [doi]


[url]




      
  BibTeX

  
      @article{delmont_structure_2012,
  title = {Structure, fluctuation and magnitude of a natural grassland soil metagenome},
  volume = {6},
  url = {http://www.ncbi.nlm.nih.gov/pubmed/22297556},
  doi = {10.1038/ismej.2011.197},
  journal = {ISME J},
  author = {Delmont, T. O. and Prestat, E. and Keegan, K. P. and Faubladier, M. and Robe, P. and Clark, I. M. and Pelletier, E. and Hirsch, P. R. and Meyer, Folker and Gilbert, J. A. and Le Paslier, D. and Simonet, P. and Vogel, T. M.},
  year = {2012},
  note = {Type: Journal Article}
}

      

      



      12. 

    12. 




 Elizabeth M Glass and  Folker Meyer.

Analysis of metagenomics data.


  Bioinformatics for High Throughput Sequencing.
  


2012.

  Springer, New York, NY.







      
  BibTeX

  
      @incollection{glass_analysis_2012,
  title = {Analysis of metagenomics data},
  booktitle = {Bioinformatics for {High} {Throughput} {Sequencing}},
  publisher = {Springer, New York, NY},
  author = {Glass, Elizabeth M and Meyer, Folker},
  year = {2012}
}

      

      



      13. 

    13. 




 Torsten Thomas,  Jack Gilbert, and  Folker Meyer.

Metagenomics-a guide from sampling to data analysis.


  Microbial informatics and experimentation.
  


2012.







      
  BibTeX

  
      @article{thomas_metagenomics-guide_2012,
  title = {Metagenomics-a guide from sampling to data analysis},
  volume = {2},
  journal = {Microbial informatics and experimentation},
  author = {Thomas, Torsten and Gilbert, Jack and Meyer, Folker},
  year = {2012},
  note = {Publisher: BioMed Central}
}

      

      



      14. 

    14. 




 J Gilbert and  Folker Meyer.

Modeling the Earth Microbiome – Careful planning can reduce sampling and measurement biases while building data sets describing microbes across multiple ecosystems.


  ASM Microbe.
  


2012.







      
  BibTeX

  
      @article{gilbert_modeling_2012,
  title = {Modeling the {Earth} {Microbiome} – {Careful} planning can reduce sampling and measurement biases while building data sets describing microbes across multiple ecosystems},
  journal = {ASM Microbe},
  author = {Gilbert, J and Meyer, Folker},
  year = {2012}
}

      

      



      15. 

    15. 




 Jack A Gilbert,  Charlie Catlett,  Narayan Desai,  Rob Knight,  Owen White,  Robert Robbins,  Rajesh Sankaran,  Susanna-Assunta Sansone,  Dawn Field, and  Folker Meyer.

Conceptualizing a Genomics Software Institute (GSI).


  Standards in genomic sciences.
  


2012.







      
  BibTeX

  
      @article{gilbert_conceptualizing_2012,
  title = {Conceptualizing a {Genomics} {Software} {Institute} ({GSI})},
  volume = {6},
  journal = {Standards in genomic sciences},
  author = {Gilbert, Jack A and Catlett, Charlie and Desai, Narayan and Knight, Rob and White, Owen and Robbins, Robert and Sankaran, Rajesh and Sansone, Susanna-Assunta and Field, Dawn and Meyer, Folker},
  year = {2012},
  note = {Publisher: BioMed Central}
}

      

      



      16. 

    16. 




 Le T Phung,  William L Trimble,  Folker Meyer,  Jack A Gilbert, and  Simon Silver.

Draft genome sequence of Alcaligenes faecalis subsp. faecalis NCIB 8687 (CCUG 2071).



2012.

  American Society for Microbiology 1752 N St., NW, Washington, DC.







      
  BibTeX

  
      @misc{phung_draft_2012,
  title = {Draft genome sequence of {Alcaligenes} faecalis subsp. faecalis {NCIB} 8687 ({CCUG} 2071)},
  publisher = {American Society for Microbiology 1752 N St., NW, Washington, DC},
  author = {Phung, Le T and Trimble, William L and Meyer, Folker and Gilbert, Jack A and Silver, Simon},
  year = {2012}
}

      

      



      17. 

    17. 




 Andrea D Olivas,  Benjamin D Shogan,  Vesta Valuckaite,  Alexander Zaborin,  Natalya Belogortseva,  Mark Musch,  Folker Meyer,  William L. Trimble,  Gary An,  Jack Gilbert, and  John Alverdy.

Intestinal tissues induce an SNP mutation in Pseudomonas aeruginosa that enhances its virulence: possible role in anastomotic leak.



2012.







      
  BibTeX

  
      @article{olivas_intestinal_2012,
  title = {Intestinal tissues induce an {SNP} mutation in {Pseudomonas} aeruginosa that enhances its virulence: possible role in anastomotic leak},
  author = {Olivas, Andrea D and Shogan, Benjamin D and Valuckaite, Vesta and Zaborin, Alexander and Belogortseva, Natalya and Musch, Mark and Meyer, Folker and L. Trimble, William and An, Gary and Gilbert, Jack and Alverdy, John},
  year = {2012},
  note = {Publisher: Public Library of Science San Francisco, USA}
}

      

      



      18. 

    18. 




 F Meyer,  WL Trimble,  EB Chang, and  KM Handley.

Functional predictions from inference and observation in sequence-based inflammatory bowel disease research.


  Genome Biology.
  


2012.







      
  BibTeX

  
      @article{meyer_functional_2012,
  title = {Functional predictions from inference and observation in sequence-based inflammatory bowel disease research},
  volume = {13},
  journal = {Genome Biology},
  author = {Meyer, F and Trimble, WL and Chang, EB and Handley, KM},
  year = {2012}
}

      

      



      19. 

    19. 




 William L Trimble,  Le T Phung,  Folker Meyer,  Simon Silver, and  Jack A Gilbert.

Draft genome sequence of Achromobacter piechaudii strain HLE.



2012.

  American Society for Microbiology 1752 N St., NW, Washington, DC.







      
  BibTeX

  
      @misc{trimble_draft_2012,
  title = {Draft genome sequence of {Achromobacter} piechaudii strain {HLE}},
  publisher = {American Society for Microbiology 1752 N St., NW, Washington, DC},
  author = {Trimble, William L and Phung, Le T and Meyer, Folker and Silver, Simon and Gilbert, Jack A},
  year = {2012}
}

      

      



      20. 

    20. 




 William L Trimble,  Le T Phung,  Folker Meyer,  Jack A Gilbert, and  Simon Silver.

Draft genome sequence of Agrobacterium albertimagni strain AOL15.



2012.

  American Society for Microbiology 1752 N St., NW, Washington, DC.







      
  BibTeX

  
      @misc{trimble_draft_2012-1,
  title = {Draft genome sequence of {Agrobacterium} albertimagni strain {AOL15}},
  publisher = {American Society for Microbiology 1752 N St., NW, Washington, DC},
  author = {Trimble, William L and Phung, Le T and Meyer, Folker and Gilbert, Jack A and Silver, Simon},
  year = {2012}
}

      

      



      21. 

    21. 




 Jack A Gilbert,  William L Trimble,  Le T Phung,  Folker Meyer, and  Simon Silver.

Draft Genome Sequence of Achromobacter.


  J. Bacteriol.
  


2012.







      
  BibTeX

  
      @article{gilbert_draft_2012,
  title = {Draft {Genome} {Sequence} of {Achromobacter}},
  volume = {194},
  journal = {J. Bacteriol},
  author = {Gilbert, Jack A and Trimble, William L and Phung, Le T and Meyer, Folker and Silver, Simon},
  year = {2012}
}

      

      



    

    2011
    

    1. 




 Katrin M Kirschbaum,  Frank Musshoff,  Ricarda Schmithausen,  Sarah Stockhausen, and  Burkhard Madea.

Optimization and validation of CEDIA drugs of abuse immunoassay tests in serum on Hitachi 912.


  Forensic science international.
  


2011.

  Elsevier.







      
  BibTeX

  
      @article{kirschbaum2011optimization,
  title = {Optimization and validation of CEDIA drugs of abuse immunoassay tests in serum on Hitachi 912},
  author = {Kirschbaum, Katrin M and Musshoff, Frank and Schmithausen, Ricarda and Stockhausen, Sarah and Madea, Burkhard},
  journal = {Forensic science international},
  volume = {212},
  year = {2011},
  publisher = {Elsevier}
}

      

      



      2. 

    2. 




 Ricarda Maria Schmithausen.

Optinierung laborinterner Cut-off-Werte fur die immunchemische Vortestung auf Amphetamine und Cannabinoide im forensischen Labor.


  Rheinische Friedrich-Wilhelms-Universität in Bonn.
  


2011.







      
  BibTeX

  
      @phdthesis{schmithausen2011optinierung,
  title = {Optinierung laborinterner Cut-off-Werte fur die immunchemische Vortestung auf Amphetamine und Cannabinoide im forensischen Labor},
  author = {Schmithausen, Ricarda Maria},
  year = {2011},
  school = {Rheinische Friedrich-Wilhelms-Universit{\"a}t in Bonn}
}

      

      



      3. 

    3. 




 P. Yilmaz,  R. Kottmann,  D. Field,  R. Knight,  J. R. Cole,  L. Amaral-Zettler,  J. A. Gilbert,  I. Karsch-Mizrachi,  A. Johnston,  G. Cochrane,  R. Vaughan,  C. Hunter,  J. Park,  N. Morrison,  P. Rocca-Serra,  P. Sterk,  M. Arumugam,  M. Bailey,  L. Baumgartner,  B. W. Birren,  M. J. Blaser,  V. Bonazzi,  T. Booth,  P. Bork,  F. D. Bushman,  P. L. Buttigieg,  P. S. Chain,  E. Charlson,  E. K. Costello,  H. Huot-Creasy,  P. Dawyndt,  T. DeSantis,  N. Fierer,  J. A. Fuhrman,  R. E. Gallery,  D. Gevers,  R. A. Gibbs,  I. San Gil,  A. Gonzalez,  J. I. Gordon,  R. Guralnick,  W. Hankeln,  S. Highlander,  P. Hugenholtz,  J. Jansson,  A. L. Kau,  S. T. Kelley,  J. Kennedy,  D. Knights,  O. Koren,  J. Kuczynski,  N. Kyrpides,  R. Larsen,  C. L. Lauber,  T. Legg,  R. E. Ley,  C. A. Lozupone,  W. Ludwig,  D. Lyons,  E. Maguire,  B. A. Methe,  Folker Meyer,  B. Muegge,  S. Nakielny,  K. E. Nelson,  D. Nemergut,  J. D. Neufeld,  L. K. Newbold,  A. E. Oliver,  N. R. Pace,  G. Palanisamy,  J. Peplies,  J. Petrosino,  L. Proctor,  E. Pruesse,  C. Quast,  J. Raes,  S. Ratnasingham,  J. Ravel,  D. A. Relman,  S. Assunta-Sansone,  P. D. Schloss,  L. Schriml,  R. Sinha,  M. I. Smith,  E. Sodergren,  A. Spo,  J. Stombaugh,  J. M. Tiedje,  D. V. Ward,  G. M. Weinstock,  D. Wendel,  O. White,  A. Whiteley,  A. Wilke,  J. R. Wortman,  T. Yatsunenko, and  F. O. Glockner.

Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications.


  Nat Biotechnol.
  


2011.



  [doi]


[url]




      
  BibTeX

  
      @article{yilmaz_minimum_2011,
  title = {Minimum information about a marker gene sequence ({MIMARKS}) and minimum information about any (x) sequence ({MIxS}) specifications},
  volume = {29},
  url = {http://www.ncbi.nlm.nih.gov/pubmed/21552244},
  doi = {10.1038/nbt.1823},
  journal = {Nat Biotechnol},
  author = {Yilmaz, P. and Kottmann, R. and Field, D. and Knight, R. and Cole, J. R. and Amaral-Zettler, L. and Gilbert, J. A. and Karsch-Mizrachi, I. and Johnston, A. and Cochrane, G. and Vaughan, R. and Hunter, C. and Park, J. and Morrison, N. and Rocca-Serra, P. and Sterk, P. and Arumugam, M. and Bailey, M. and Baumgartner, L. and Birren, B. W. and Blaser, M. J. and Bonazzi, V. and Booth, T. and Bork, P. and Bushman, F. D. and Buttigieg, P. L. and Chain, P. S. and Charlson, E. and Costello, E. K. and Huot-Creasy, H. and Dawyndt, P. and DeSantis, T. and Fierer, N. and Fuhrman, J. A. and Gallery, R. E. and Gevers, D. and Gibbs, R. A. and San Gil, I. and Gonzalez, A. and Gordon, J. I. and Guralnick, R. and Hankeln, W. and Highlander, S. and Hugenholtz, P. and Jansson, J. and Kau, A. L. and Kelley, S. T. and Kennedy, J. and Knights, D. and Koren, O. and Kuczynski, J. and Kyrpides, N. and Larsen, R. and Lauber, C. L. and Legg, T. and Ley, R. E. and Lozupone, C. A. and Ludwig, W. and Lyons, D. and Maguire, E. and Methe, B. A. and Meyer, Folker and Muegge, B. and Nakielny, S. and Nelson, K. E. and Nemergut, D. and Neufeld, J. D. and Newbold, L. K. and Oliver, A. E. and Pace, N. R. and Palanisamy, G. and Peplies, J. and Petrosino, J. and Proctor, L. and Pruesse, E. and Quast, C. and Raes, J. and Ratnasingham, S. and Ravel, J. and Relman, D. A. and Assunta-Sansone, S. and Schloss, P. D. and Schriml, L. and Sinha, R. and Smith, M. I. and Sodergren, E. and Spo, A. and Stombaugh, J. and Tiedje, J. M. and Ward, D. V. and Weinstock, G. M. and Wendel, D. and White, O. and Whiteley, A. and Wilke, A. and Wortman, J. R. and Yatsunenko, T. and Glockner, F. O.},
  year = {2011},
  note = {Type: Journal Article}
}

      

      



      4. 

    4. 




 A. Wilke,  J. Wilkening,  E. M. Glass,  N. Desai, and  Folker Meyer.

An experience report: porting the MG‐RAST rapid metagenomics analysis pipeline to the cloud..


  Concurrency and Computation: Practice and Experience.
  


2011.







      
  BibTeX

  
      @article{wilke_experience_2011,
  title = {An experience report: porting the {MG}‐{RAST} rapid metagenomics analysis pipeline to the cloud.},
  volume = {23},
  journal = {Concurrency and Computation: Practice and Experience},
  author = {Wilke, A. and Wilkening, J. and Glass, E. M. and Desai, N. and Meyer, Folker},
  year = {2011},
  note = {Type: Journal Article}
}

      

      



      5. 

    5. 




 A. Wilke,  J. Wilkening,  E.M. Glass,  N. Desai, and  Folker Meyer.

An experience report: porting the MG-RAST rapid metagenomics analysis pipeline to the cloud.


  Concurrency and Computation: Practice and Experience.
  


2011.







      
  BibTeX

  
      @article{wilke_experience_2011-1,
  title = {An experience report: porting the {MG}-{RAST} rapid metagenomics analysis pipeline to the cloud},
  volume = {23},
  journal = {Concurrency and Computation: Practice and Experience},
  author = {Wilke, A. and Wilkening, J. and Glass, E.M. and Desai, N. and Meyer, Folker},
  year = {2011},
  note = {Type: Journal Article}
}

      

      



      6. 

    6. 




 Suparna Mitra,  Paul Rupek,  Daniel C Richter,  Tim Urich,  Jack A Gilbert,  Folker Meyer,  Andreas Wilke, and  Daniel H Huson.

Functional analysis of metagenomes and metatranscriptomes using SEED and KEGG.


  BMC bioinformatics.
  


2011.







      
  BibTeX

  
      @article{mitra_functional_2011,
  title = {Functional analysis of metagenomes and metatranscriptomes using {SEED} and {KEGG}},
  volume = {12},
  journal = {BMC bioinformatics},
  author = {Mitra, Suparna and Rupek, Paul and Richter, Daniel C and Urich, Tim and Gilbert, Jack A and Meyer, Folker and Wilke, Andreas and Huson, Daniel H},
  year = {2011},
  note = {Publisher: BioMed Central}
}

      

      



      7. 

    7. 




 Steffen Lemke,  Dionysios A Antonopoulos,  Folker Meyer,  Marc H Domanus, and  Urs Schmidt-Ott.

BMP signaling components in embryonic transcriptomes of the hover fly Episyrphus balteatus (Syrphidae).


  Bmc Genomics.
  


2011.







      
  BibTeX

  
      @article{lemke_bmp_2011,
  title = {{BMP} signaling components in embryonic transcriptomes of the hover fly {Episyrphus} balteatus ({Syrphidae})},
  volume = {12},
  journal = {Bmc Genomics},
  author = {Lemke, Steffen and Antonopoulos, Dionysios A and Meyer, Folker and Domanus, Marc H and Schmidt-Ott, Urs},
  year = {2011},
  note = {Publisher: BioMed Central}
}

      

      



      8. 

    8. 




 Christopher S Henry,  Ross Overbeek,  Fangfang Xia,  Aaron A Best,  Elizabeth Glass,  Jack Gilbert,  Peter Larsen,  Rob Edwards,  Terry Disz,  Folker Meyer, and  Rick Stevens.

Connecting genotype to phenotype in the era of high-throughput sequencing.


  Biochimica et Biophysica Acta (BBA)-General Subjects.
  


2011.







      
  BibTeX

  
      @article{henry_connecting_2011,
  title = {Connecting genotype to phenotype in the era of high-throughput sequencing},
  volume = {1810},
  journal = {Biochimica et Biophysica Acta (BBA)-General Subjects},
  author = {Henry, Christopher S and Overbeek, Ross and Xia, Fangfang and Best, Aaron A and Glass, Elizabeth and Gilbert, Jack and Larsen, Peter and Edwards, Rob and Disz, Terry and Meyer, Folker and Stevens, Rick},
  year = {2011},
  note = {Publisher: Elsevier}
}

      

      



      9. 

    9. 




 Andreas Wilke,  Jared Wilkening,  Elizabeth M Glass,  Narayan L Desai, and  Folker Meyer.

Porting the MG-RAST metagenomic data analysis pipeline to the cloud.


  Concurrency and Computation: Practice & Experience.
  


2011.







      
  BibTeX

  
      @article{wilke_porting_2011,
  title = {Porting the {MG}-{RAST} metagenomic data analysis pipeline to the cloud},
  volume = {23},
  journal = {Concurrency and Computation: Practice \& Experience},
  author = {Wilke, Andreas and Wilkening, Jared and Glass, Elizabeth M and Desai, Narayan L and Meyer, Folker},
  year = {2011},
  note = {Publisher: John Wiley and Sons Ltd.}
}

      

      



      10. 

    10. 




 Peter E Larsen,  Frank R Collart,  Dawn Field,  Folker Meyer,  Kevin P Keegan,  Christopher S Henry,  John McGrath,  John Quinn, and  Jack A Gilbert.

Predicted Relative Metabolomic Turnover (PRMT): determining metabolic turnover from a coastal marine metagenomic dataset.


  Microbial informatics and experimentation.
  


2011.







      
  BibTeX

  
      @article{larsen_predicted_2011,
  title = {Predicted {Relative} {Metabolomic} {Turnover} ({PRMT}): determining metabolic turnover from a coastal marine metagenomic dataset},
  volume = {1},
  journal = {Microbial informatics and experimentation},
  author = {Larsen, Peter E and Collart, Frank R and Field, Dawn and Meyer, Folker and Keegan, Kevin P and Henry, Christopher S and McGrath, John and Quinn, John and Gilbert, Jack A},
  year = {2011},
  note = {Publisher: BioMed Central}
}

      

      



      11. 

    11. 




 D. A. Antonopoulos,  E. M. Glass, and  Folker Meyer.

Analyzing Metagenomic data: inferring microbial community function with MG-RAST.


  Metagenomics and its applications in agriculture, biomedicine, and environmental studies publisher.
  


2011.

  Nova Science Publishers.







      
  BibTeX

  
      @incollection{antonopoulos_analyzing_2011,
  title = {Analyzing {Metagenomic} data: inferring microbial community function with {MG}-{RAST}},
  booktitle = {Metagenomics and its applications in agriculture, biomedicine, and environmental studies publisher},
  publisher = {Nova Science Publishers},
  author = {Antonopoulos, D. A. and Glass, E. M. and Meyer, Folker},
  year = {2011}
}

      

      



      12. 

    12. 




 Folker Meyer and  Nikos Kyrpides.

Proposal for Open Discussion-Informatics Challenges for Next Generation Sequencing Metagenomics Experiments..


  BIOINFORMATICS.
  


2011.







      
  BibTeX

  
      @inproceedings{meyer_proposal_2011,
  title = {Proposal for {Open} {Discussion}-{Informatics} {Challenges} for {Next} {Generation} {Sequencing} {Metagenomics} {Experiments}.},
  booktitle = {{BIOINFORMATICS}},
  author = {Meyer, Folker and Kyrpides, Nikos},
  year = {2011}
}

      

      



      13. 

    13. 




 Peter E Larsen,  Frank Collart,  Folker Meyer, and  Jack A Gilbert.

PREDICTED RELATIVE METABOLOMIC TURNOVER-Predicting Changes in the Environmental Metabolome from the Metagenome.


  International Joint Conference on Biomedical Engineering Systems and Technologies.
  


2011.

  SCITEPRESS.







      
  BibTeX

  
      @inproceedings{larsen_predicted_2011-1,
  title = {{PREDICTED} {RELATIVE} {METABOLOMIC} {TURNOVER}-{Predicting} {Changes} in the {Environmental} {Metabolome} from the {Metagenome}},
  volume = {2},
  booktitle = {International {Joint} {Conference} on {Biomedical} {Engineering} {Systems} and {Technologies}},
  publisher = {SCITEPRESS},
  author = {Larsen, Peter E and Collart, Frank and Meyer, Folker and Gilbert, Jack A},
  year = {2011}
}

      

      



      14. 

    14. 




 Peter E Larsen,  Frank Collart,  Folker Meyer, and  Jack A Gilbert.

PREDICTED RELATIVE METABOLOMIC TURNOVER.



2011.







      
  BibTeX

  
      @article{larsen_predicted_2011-2,
  title = {{PREDICTED} {RELATIVE} {METABOLOMIC} {TURNOVER}},
  author = {Larsen, Peter E and Collart, Frank and Meyer, Folker and Gilbert, Jack A},
  year = {2011}
}

      

      



      15. 

    15. 




 Folker Meyer and  Nikos Kyrpides.

PROPOSAL FOR OPEN DISCUSSION.



2011.







      
  BibTeX

  
      @article{meyer_proposal_2011-1,
  title = {{PROPOSAL} {FOR} {OPEN} {DISCUSSION}},
  author = {Meyer, Folker and Kyrpides, Nikos},
  year = {2011}
}

      

      



      16. 

    16. 




 Peter E Larsen,  Frank R Collart,  Dawn Field,  Folker Meyer,  Kevin P Keegan,  Christopher S Henry,  John McGrath,  John Quinn, and  Jack A Gilbert.

Relative metabolomic flux: Predicting changes in the environmental metabolome from the metagenome.


  Microbial Informatics and Experimentation.
  


2011.







      
  BibTeX

  
      @article{larsen_relative_2011,
  title = {Relative metabolomic flux: {Predicting} changes in the environmental metabolome from the metagenome},
  volume = {1},
  journal = {Microbial Informatics and Experimentation},
  author = {Larsen, Peter E and Collart, Frank R and Field, Dawn and Meyer, Folker and Keegan, Kevin P and Henry, Christopher S and McGrath, John and Quinn, John and Gilbert, Jack A},
  year = {2011},
  note = {Publisher: BioMed Central Ltd.}
}

      

      



      17. 

    17. 




 A. Birmingham,  J. C. Clemente,  N. Desai,  J. Gilbert,  A. Gonzalez,  N. Kyrpides,  Folker Meyer,  E. Nawrocki,  P. Sterk,  J. Stombaugh,  Z. Weinberg,  D. Wendel,  N. B. Leontis,  C. Zirbel,  R. Knight, and  A. Laederach.

Meeting report of the RNA Ontology Consortium January 8-9, 2011.


  Stand Genomic Sci.
  


2011.



  [doi]


[url]




      
  BibTeX

  
      @article{birmingham_meeting_2011-1,
  title = {Meeting report of the {RNA} {Ontology} {Consortium} {January} 8-9, 2011},
  volume = {4},
  url = {https://www.ncbi.nlm.nih.gov/pubmed/21677862},
  doi = {10.4056/sigs.1724282},
  journal = {Stand Genomic Sci},
  author = {Birmingham, A. and Clemente, J. C. and Desai, N. and Gilbert, J. and Gonzalez, A. and Kyrpides, N. and Meyer, Folker and Nawrocki, E. and Sterk, P. and Stombaugh, J. and Weinberg, Z. and Wendel, D. and Leontis, N. B. and Zirbel, C. and Knight, R. and Laederach, A.},
  year = {2011},
  note = {Type: Journal Article}
}

      

      



    

    2010
    

    1. 




 N. Kyrpides,  D. Field,  P. Sterk,  R. Kottmann,  F. O. Glockner,  L. Hirschman,  G. M. Garrity,  G. Cochrane, and  J. Wooley.

Meeting Report from the Genomic Standards Consortium (GSC) Workshop 8.


  Stand Genomic Sci.
  


2010.



  [doi]


[url]




      
  BibTeX

  
      @article{kyrpides_meeting_2010,
  title = {Meeting {Report} from the {Genomic} {Standards} {Consortium} ({GSC}) {Workshop} 8},
  volume = {3},
  url = {https://www.ncbi.nlm.nih.gov/pubmed/21304696},
  doi = {10.4056/sigs.1022942},
  journal = {Stand Genomic Sci},
  author = {Kyrpides, N. and Field, D. and Sterk, P. and Kottmann, R. and Glockner, F. O. and Hirschman, L. and Garrity, G. M. and Cochrane, G. and Wooley, J.},
  year = {2010},
  note = {Type: Journal Article}
}

      

      



      2. 

    2. 




 E. Glass,  Folker Meyer,  J. A. Gilbert,  D. Field,  S. Hunter,  R. Kottmann,  N. Kyrpides,  S. Sansone,  L. Schriml,  P. Sterk,  O. White, and  J. Wooley.

Meeting Report from the Genomic Standards Consortium (GSC) Workshop 10.


  Stand Genomic Sci.
  


2010.



  [doi]


[url]




      
  BibTeX

  
      @article{glass_meeting_2010,
  title = {Meeting {Report} from the {Genomic} {Standards} {Consortium} ({GSC}) {Workshop} 10},
  volume = {3},
  url = {https://www.ncbi.nlm.nih.gov/pubmed/21304723},
  doi = {10.4056/sigs.1423520},
  journal = {Stand Genomic Sci},
  author = {Glass, E. and Meyer, Folker and Gilbert, J. A. and Field, D. and Hunter, S. and Kottmann, R. and Kyrpides, N. and Sansone, S. and Schriml, L. and Sterk, P. and White, O. and Wooley, J.},
  year = {2010},
  note = {Type: Journal Article}
}

      

      



      3. 

    3. 




 J. A. Gilbert,  Folker Meyer,  R. Knight,  D. Field,  N. Kyrpides,  P. Yilmaz, and  J. Wooley.

Meeting report: GSC M5 roundtable at the 13th International Society for Microbial Ecology meeting in Seattle, WA, USA August 22-27, 2010.


  Stand Genomic Sci.
  


2010.



  [doi]





      
  BibTeX

  
      @article{gilbert_meeting_2010,
  title = {Meeting report: {GSC} {M5} roundtable at the 13th {International} {Society} for {Microbial} {Ecology} meeting in {Seattle}, {WA}, {USA} {August} 22-27, 2010},
  volume = {3},
  doi = {10.4056/sigs.1333437},
  journal = {Stand Genomic Sci},
  author = {Gilbert, J. A. and Meyer, Folker and Knight, R. and Field, D. and Kyrpides, N. and Yilmaz, P. and Wooley, J.},
  year = {2010},
  note = {Type: Journal Article}
}

      

      



      4. 

    4. 




 Vincent B Young,  Eugene B Chang,  Folker Meyer,  Mitchell L Sogin,  Thomas M Schmidt, and  James Tiedje.

The Role of the Gut Microbiota in Ulcerative Colitis.



2010.







      
  BibTeX

  
      @article{young_role_2010,
  title = {The {Role} of the {Gut} {Microbiota} in {Ulcerative} {Colitis}},
  author = {Young, Vincent B and Chang, Eugene B and Meyer, Folker and Sogin, Mitchell L and Schmidt, Thomas M and Tiedje, James},
  year = {2010},
  note = {Publisher: Nature Publishing Group}
}

      

      



      5. 

    5. 




 Elizabeth M Glass,  Jared Wilkening,  Andreas Wilke,  Dionysios Antonopoulos, and  Folker Meyer.

Using the metagenomics RAST server (MG-RAST) for analyzing shotgun metagenomes.


  Cold Spring Harbor Protocols.
  


2010.







      
  BibTeX

  
      @article{glass_using_2010,
  title = {Using the metagenomics {RAST} server ({MG}-{RAST}) for analyzing shotgun metagenomes},
  volume = {2010},
  journal = {Cold Spring Harbor Protocols},
  author = {Glass, Elizabeth M and Wilkening, Jared and Wilke, Andreas and Antonopoulos, Dionysios and Meyer, Folker},
  year = {2010},
  note = {Publisher: Cold Spring Harbor Laboratory Press}
}

      

      



      6. 

    6. 




 Steffen Lemke,  Stephanie E Busch,  Dionysios A Antonopoulos,  Folker Meyer,  Marc H Domanus, and  Urs Schmidt-Ott.

Maternal activation of gap genes in the hover fly Episyrphus.


  Development.
  


2010.







      
  BibTeX

  
      @article{lemke_maternal_2010,
  title = {Maternal activation of gap genes in the hover fly {Episyrphus}},
  volume = {137},
  journal = {Development},
  author = {Lemke, Steffen and Busch, Stephanie E and Antonopoulos, Dionysios A and Meyer, Folker and Domanus, Marc H and Schmidt-Ott, Urs},
  year = {2010},
  note = {Publisher: Company of Biologists}
}

      

      



      7. 

    7. 




 Yunwei Wang,  Dionysios A Antonopoulos,  Xiaorong Zhu,  Laura Harrell,  Ira Hanan,  John C Alverdy,  Folker Meyer,  Mark W Musch,  Vincent B Young, and  Eugene B Chang.

Laser capture microdissection and metagenomic analysis of intact mucosa-associated microbial communities of human colon.


  Applied microbiology and biotechnology.
  


2010.







      
  BibTeX

  
      @article{wang_laser_2010-1,
  title = {Laser capture microdissection and metagenomic analysis of intact mucosa-associated microbial communities of human colon},
  volume = {88},
  journal = {Applied microbiology and biotechnology},
  author = {Wang, Yunwei and Antonopoulos, Dionysios A and Zhu, Xiaorong and Harrell, Laura and Hanan, Ira and Alverdy, John C and Meyer, Folker and Musch, Mark W and Young, Vincent B and Chang, Eugene B},
  year = {2010},
  note = {Publisher: Springer-Verlag}
}

      

      



      8. 

    8. 




 Catherine A Pfister,  Folker Meyer, and  Dionysios A Antonopoulos.

Metagenomic profiling of a microbial assemblage associated with the California mussel: a node in networks of carbon and nitrogen cycling.


  PLoS One.
  


2010.







      
  BibTeX

  
      @article{pfister_metagenomic_2010,
  title = {Metagenomic profiling of a microbial assemblage associated with the {California} mussel: a node in networks of carbon and nitrogen cycling},
  volume = {5},
  journal = {PLoS One},
  author = {Pfister, Catherine A and Meyer, Folker and Antonopoulos, Dionysios A},
  year = {2010},
  note = {Publisher: Public Library of Science}
}

      

      



      9. 

    9. 




 Jack A Gilbert,  Folker Meyer, and  Mark J Bailey.

The Future of microbial metagenomics (or is ignorance bliss?).


  The ISME Journal.
  


2010.







      
  BibTeX

  
      @article{gilbert_future_2010,
  title = {The {Future} of microbial metagenomics (or is ignorance bliss?)},
  volume = {5},
  journal = {The ISME Journal},
  author = {Gilbert, Jack A and Meyer, Folker and Bailey, Mark J},
  year = {2010},
  note = {Publisher: Nature Publishing Group}
}

      

      



      10. 

    10. 




 Jack A Gilbert,  Folker Meyer,  Rob Knight,  Dawn Field,  Nikos Kyrpides,  Pelin Yilmaz, and  John Wooley.

Meeting report: GSC M5 roundtable at the 13th International Society for Microbial Ecology meeting in Seattle, WA, USA August 22–27, 2010.


  Standards in genomic sciences.
  


2010.







      
  BibTeX

  
      @article{gilbert_meeting_2010-2,
  title = {Meeting report: {GSC} {M5} roundtable at the 13th {International} {Society} for {Microbial} {Ecology} meeting in {Seattle}, {WA}, {USA} {August} 22–27, 2010},
  volume = {3},
  journal = {Standards in genomic sciences},
  author = {Gilbert, Jack A and Meyer, Folker and Knight, Rob and Field, Dawn and Kyrpides, Nikos and Yilmaz, Pelin and Wooley, John},
  year = {2010},
  note = {Publisher: BioMed Central}
}

      

      



      11. 

    11. 




 Sarah L O’Brien,  Elizabeth M Glass,  Jennifer M Brulc,  Jack A Gilbert,  Dionysios A Antonopoulos, and  Folker Meyer.

Meeting Report: The 2nd Annual Argonne Soils Workshop, Argonne National Laboratory, Chicago USA, October 6-8, 2010.



2010.







      
  BibTeX

  
      @article{obrien_meeting_2010,
  title = {Meeting {Report}: {The} 2nd {Annual} {Argonne} {Soils} {Workshop}, {Argonne} {National} {Laboratory}, {Chicago} {USA}, {October} 6-8, 2010},
  author = {O’Brien, Sarah L and Glass, Elizabeth M and Brulc, Jennifer M and Gilbert, Jack A and Antonopoulos, Dionysios A and Meyer, Folker},
  year = {2010}
}

      

      



      12. 

    12. 




 Jack A Gilbert,  Folker Meyer,  Lynn Schriml,  Ian R Joint,  Martin Mühling, and  Dawn Field.

Metagenomes and metatranscriptomes from the L4 long-term coastal monitoring station in the Western English Channel.


  Standards in genomic sciences.
  


2010.







      
  BibTeX

  
      @article{gilbert_metagenomes_2010,
  title = {Metagenomes and metatranscriptomes from the {L4} long-term coastal monitoring station in the {Western} {English} {Channel}},
  volume = {3},
  journal = {Standards in genomic sciences},
  author = {Gilbert, Jack A and Meyer, Folker and Schriml, Lynn and Joint, Ian R and Mühling, Martin and Field, Dawn},
  year = {2010},
  note = {Publisher: BioMed Central}
}

      

      



      13. 

    13. 




 Jack A Gilbert,  Folker Meyer,  Dawn Field,  Lynn M Schriml, and  George M Garrity.

Metagenomics: A foundling finds its feet.


  Standards in genomic sciences.
  


2010.







      
  BibTeX

  
      @article{gilbert_metagenomics_2010,
  title = {Metagenomics: {A} foundling finds its feet},
  volume = {3},
  journal = {Standards in genomic sciences},
  author = {Gilbert, Jack A and Meyer, Folker and Field, Dawn and Schriml, Lynn M and Garrity, George M},
  year = {2010},
  note = {Publisher: BioMed Central}
}

      

      



      14. 

    14. 




 Folker Meyer.

Casting a Wider Net: Distributed Resources for Metagenomics (2010 JGI/ANL HPC Workshop).


  DOE Joint Genome Institute (JGI), LBNL (Lawrence Berkeley National ….
  


2010.







      
  BibTeX

  
      @techreport{meyer_casting_2010,
  title = {Casting a {Wider} {Net}: {Distributed} {Resources} for {Metagenomics} (2010 {JGI}/{ANL} {HPC} {Workshop})},
  institution = {DOE Joint Genome Institute (JGI), LBNL (Lawrence Berkeley National …},
  author = {Meyer, Folker},
  year = {2010}
}

      

      



      15. 

    15. 




 Pelin Yilmaz,  Renzo Kottmann,  Dawn Field,  Rob Knight,  James Cole,  Linda Amaral-Zettler,  Jack Gilbert,  Ilene Karsch-Mizrachi,  Anjanette Johnston,  Guy Cochrane, and  Folker Meyer.

The “minimum information about an environmental sequence”(MIENS) specification.


  Nature Precedings.
  


2010.




[url]




      
  BibTeX

  
      @article{yilmaz_minimum_2010-1,
  title = {The “minimum information about an environmental sequence”({MIENS}) specification},
  url = {https://www.nature.com/articles/npre.2010.5252.1.pdf?proof=t},
  journal = {Nature Precedings},
  author = {Yilmaz, Pelin and Kottmann, Renzo and Field, Dawn and Knight, Rob and Cole, James and Amaral-Zettler, Linda and Gilbert, Jack and Karsch-Mizrachi, Ilene and Johnston, Anjanette and Cochrane, Guy and Meyer, Folker},
  year = {2010}
}

      

      



      16. 

    16. 




 J. A. Gilbert,  Folker Meyer,  J. Jansson,  J. Gordon,  N. Pace,  J. Tiedje,  R. Ley,  N. Fierer,  D. Field,  N. Kyrpides,  F. O. Glockner,  H. P. Klenk,  K. E. Wommack,  E. Glass,  K. Docherty,  R. Gallery,  R. Stevens, and  R. Knight.

The Earth Microbiome Project: Meeting report of the "1 EMP meeting on sample selection and acquisition" at Argonne National Laboratory October 6 2010.


  Stand Genomic Sci.
  


2010.



  [doi]


[url]




      
  BibTeX

  
      @article{gilbert_earth_2010-1,
  title = {The {Earth} {Microbiome} {Project}: {Meeting} report of the "1 {EMP} meeting on sample selection and acquisition" at {Argonne} {National} {Laboratory} {October} 6 2010},
  volume = {3},
  url = {https://www.ncbi.nlm.nih.gov/pubmed/21304728},
  doi = {10.4056/aigs.1443528},
  journal = {Stand Genomic Sci},
  author = {Gilbert, J. A. and Meyer, Folker and Jansson, J. and Gordon, J. and Pace, N. and Tiedje, J. and Ley, R. and Fierer, N. and Field, D. and Kyrpides, N. and Glockner, F. O. and Klenk, H. P. and Wommack, K. E. and Glass, E. and Docherty, K. and Gallery, R. and Stevens, R. and Knight, R.},
  year = {2010},
  note = {Type: Journal Article}
}

      

      



      17. 

    17. 




 J. A. Gilbert,  Folker Meyer,  D. Antonopoulos,  P. Balaji,  C. T. Brown,  C. T. Brown,  N. Desai,  J. A. Eisen,  D. Evers,  D. Field,  W. Feng,  D. Huson,  J. Jansson,  R. Knight,  J. Knight,  E. Kolker,  K. Konstantindis,  J. Kostka,  N. Kyrpides,  R. Mackelprang,  A. McHardy,  C. Quince,  J. Raes,  A. Sczyrba,  A. Shade, and  R. Stevens.

Meeting report: the terabase metagenomics workshop and the vision of an Earth microbiome project.


  Stand Genomic Sci.
  


2010.



  [doi]


[url]




      
  BibTeX

  
      @article{gilbert_meeting_2010-3,
  title = {Meeting report: the terabase metagenomics workshop and the vision of an {Earth} microbiome project},
  volume = {3},
  url = {https://www.ncbi.nlm.nih.gov/pubmed/21304727},
  doi = {10.4056/sigs.1433550},
  journal = {Stand Genomic Sci},
  author = {Gilbert, J. A. and Meyer, Folker and Antonopoulos, D. and Balaji, P. and Brown, C. T. and Brown, C. T. and Desai, N. and Eisen, J. A. and Evers, D. and Field, D. and Feng, W. and Huson, D. and Jansson, J. and Knight, R. and Knight, J. and Kolker, E. and Konstantindis, K. and Kostka, J. and Kyrpides, N. and Mackelprang, R. and McHardy, A. and Quince, C. and Raes, J. and Sczyrba, A. and Shade, A. and Stevens, R.},
  year = {2010},
  note = {Type: Journal Article}
}

      

      



      18. 

    18. 




 D. Field,  S. Sansone,  E. F. Delong,  P. Sterk,  I. Friedberg,  P. Gaudet,  S. Lewis,  R. Kottmann,  L. Hirschman,  G. Garrity,  G. Cochrane,  J. Wooley,  Folker Meyer,  S. Hunter,  O. White,  B. Bramlett,  S. Gregurick,  H. Lapp,  S. Orchard,  P. Rocca-Serra,  A. Ruttenberg,  N. Shah,  C. Taylor, and  A. Thessen.

Meeting Report: BioSharing at ISMB 2010.


  Stand Genomic Sci.
  


2010.



  [doi]


[url]




      
  BibTeX

  
      @article{field_meeting_2010-2,
  title = {Meeting {Report}: {BioSharing} at {ISMB} 2010},
  volume = {3},
  url = {https://www.ncbi.nlm.nih.gov/pubmed/21304729},
  doi = {10.4056/sigs/1403501},
  journal = {Stand Genomic Sci},
  author = {Field, D. and Sansone, S. and Delong, E. F. and Sterk, P. and Friedberg, I. and Gaudet, P. and Lewis, S. and Kottmann, R. and Hirschman, L. and Garrity, G. and Cochrane, G. and Wooley, J. and Meyer, Folker and Hunter, S. and White, O. and Bramlett, B. and Gregurick, S. and Lapp, H. and Orchard, S. and Rocca-Serra, P. and Ruttenberg, A. and Shah, N. and Taylor, C. and Thessen, A.},
  year = {2010},
  note = {Type: Journal Article}
}

      

      



      19. 

    19. 




 G. J. Hather,  W. Haynes,  R. Higdon,  N. Kolker,  E. A. Stewart,  P. Arzberger,  P. Chain,  D. Field,  B. R. Franza,  B. Lin,  Folker Meyer,  V. Ozdemir,  C. V. Smith,  G. van Belle,  J. Wooley, and  E. Kolker.

The United States of America and scientific research.


  PLoS One.
  


2010.



  [doi]


[url]




      
  BibTeX

  
      @article{hather_united_2010-1,
  title = {The {United} {States} of {America} and scientific research},
  volume = {5},
  url = {https://www.ncbi.nlm.nih.gov/pubmed/20808949},
  doi = {10.1371/journal.pone.0012203},
  journal = {PLoS One},
  author = {Hather, G. J. and Haynes, W. and Higdon, R. and Kolker, N. and Stewart, E. A. and Arzberger, P. and Chain, P. and Field, D. and Franza, B. R. and Lin, B. and Meyer, Folker and Ozdemir, V. and Smith, C. V. and van Belle, G. and Wooley, J. and Kolker, E.},
  year = {2010},
  note = {Type: Journal Article}
}

      

      



      20. 

    20. 




 D. Field,  S. Sansone,  E. F. Delong,  P. Sterk,  I. Friedberg,  R. Kottmann,  L. Hirschman,  G. Garrity,  G. Cochrane,  J. Wooley,  Folker Meyer,  S. Hunter, and  O. White.

Meeting Report: Metagenomics, Metadata and MetaAnalysis (M3) at ISMB 2010.


  Stand Genomic Sci.
  


2010.



  [doi]


[url]




      
  BibTeX

  
      @article{field_meeting_2010-3,
  title = {Meeting {Report}: {Metagenomics}, {Metadata} and {MetaAnalysis} ({M3}) at {ISMB} 2010},
  volume = {3},
  url = {https://www.ncbi.nlm.nih.gov/pubmed/21304724},
  doi = {10.4056/sigs.1383476},
  journal = {Stand Genomic Sci},
  author = {Field, D. and Sansone, S. and Delong, E. F. and Sterk, P. and Friedberg, I. and Kottmann, R. and Hirschman, L. and Garrity, G. and Cochrane, G. and Wooley, J. and Meyer, Folker and Hunter, S. and White, O.},
  year = {2010},
  note = {Type: Journal Article}
}

      

      



      21. 

    21. 




 L. Hirschman,  P. Sterk,  D. Field,  J. Wooley,  G. Cochrane,  J. Gilbert,  E. Kolker,  N. Kyrpides,  Folker Meyer,  I. Mizrachi,  Y. Nakamura,  S. A. Sansone,  L. Schriml,  T. Tatusova,  O. White, and  P. Yilmaz.

Meeting Report: "Metagenomics, Metadata and Meta-analysis" (M3) Workshop at the Pacific Symposium on Biocomputing 2010.


  Stand Genomic Sci.
  


2010.



  [doi]


[url]




      
  BibTeX

  
      @article{hirschman_meeting_2010-1,
  title = {Meeting {Report}: "{Metagenomics}, {Metadata} and {Meta}-analysis" ({M3}) {Workshop} at the {Pacific} {Symposium} on {Biocomputing} 2010},
  volume = {2},
  url = {https://www.ncbi.nlm.nih.gov/pubmed/21304719},
  doi = {10.4056/sigs.802738},
  journal = {Stand Genomic Sci},
  author = {Hirschman, L. and Sterk, P. and Field, D. and Wooley, J. and Cochrane, G. and Gilbert, J. and Kolker, E. and Kyrpides, N. and Meyer, Folker and Mizrachi, I. and Nakamura, Y. and Sansone, S. A. and Schriml, L. and Tatusova, T. and White, O. and Yilmaz, P.},
  year = {2010},
  note = {Type: Journal Article}
}

      

      



      22. 

    22. 




 T. Davidsen,  R. Madupu,  P. Sterk,  D. Field,  G. Garrity,  J. Gilbert,  F. O. Glockner,  L. Hirschman,  E. Kolker,  R. Kottmann,  N. Kyrpides,  Folker Meyer,  N. Morrison,  L. Schriml,  T. Tatusova, and  J. Wooley.

Meeting Report from the Genomic Standards Consortium (GSC) Workshop 9.


  Stand Genomic Sci.
  


2010.



  [doi]


[url]




      
  BibTeX

  
      @article{davidsen_meeting_2010-3,
  title = {Meeting {Report} from the {Genomic} {Standards} {Consortium} ({GSC}) {Workshop} 9},
  volume = {3},
  url = {https://www.ncbi.nlm.nih.gov/pubmed/21304722},
  doi = {10.4056/sigs.1353455},
  journal = {Stand Genomic Sci},
  author = {Davidsen, T. and Madupu, R. and Sterk, P. and Field, D. and Garrity, G. and Gilbert, J. and Glockner, F. O. and Hirschman, L. and Kolker, E. and Kottmann, R. and Kyrpides, N. and Meyer, Folker and Morrison, N. and Schriml, L. and Tatusova, T. and Wooley, J.},
  year = {2010},
  note = {Type: Journal Article}
}

      

      



    

    2009
    

    1. 




 Folker Meyer,  R. Overbeek, and  A. Rodriguez.

FIGfams: yet another set of protein families.


  Nucleic Acids Res.
  


2009.



  [doi]





      
  BibTeX

  
      @article{meyer_figfams_2009,
  title = {{FIGfams}: yet another set of protein families},
  volume = {37},
  doi = {10.1093/nar/gkp698},
  journal = {Nucleic Acids Res},
  author = {Meyer, Folker and Overbeek, R. and Rodriguez, A.},
  year = {2009},
  note = {Type: Journal Article}
}

      

      



      2. 

    2. 




 T. Bekel,  K. Henckel,  H. Kuster,  Folker Meyer,  V. M. Runte,  H. Neuweger,  D. Paarmann,  O. Rupp,  M. Zakrzewski,  A. Puehler,  J. Stoye, and  A. Goesmann.

The Sequence Analysis and Management System - SAMS-2.0: Data management and sequence analysis adapted to changing requirements from traditional sanger sequencing to ultrafast sequencing technologies.


  Journal of Biotechnology.
  


2009.



  [doi]





      
  BibTeX

  
      @article{bekel_sequence_2009,
  title = {The {Sequence} {Analysis} and {Management} {System} - {SAMS}-2.0: {Data} management and sequence analysis adapted to changing requirements from traditional sanger sequencing to ultrafast sequencing technologies},
  volume = {140},
  doi = {10.1016/j.jbiotec.2009.01.006},
  journal = {Journal of Biotechnology},
  author = {Bekel, T. and Henckel, K. and Kuster, H. and Meyer, Folker and Runte, V. M. and Neuweger, H. and Paarmann, D. and Rupp, O. and Zakrzewski, M. and Puehler, A. and Stoye, J. and Goesmann, A.},
  year = {2009},
  note = {Type: Journal Article}
}

      

      



      3. 

    3. 




 Jared Wilkening,  Andreas Wilke,  Narayan Desai, and  Folker Meyer.

Using clouds for metagenomics: a case study.


  2009 IEEE International Conference on Cluster Computing and Workshops.
  


2009.

  IEEE.







      
  BibTeX

  
      @inproceedings{wilkening_using_2009,
  title = {Using clouds for metagenomics: a case study},
  booktitle = {2009 {IEEE} {International} {Conference} on {Cluster} {Computing} and {Workshops}},
  publisher = {IEEE},
  author = {Wilkening, Jared and Wilke, Andreas and Desai, Narayan and Meyer, Folker},
  year = {2009}
}

      

      



      4. 

    4. 




 Yunwei Wang,  Dionysios Antonopoulos,  Xiaorong Zhu,  Lev Lichtenstein,  Kenneth Drabik,  John C Alverdy,  Folker Meyer,  Vincent Young, and  Eugene B Chang.

W1622 Metagenomic Analysis of Intact Mucosa-Associated Microbial Communities of the Human Colon.


  Gastroenterology.
  


2009.







      
  BibTeX

  
      @article{wang_w1622_2009,
  title = {W1622 {Metagenomic} {Analysis} of {Intact} {Mucosa}-{Associated} {Microbial} {Communities} of the {Human} {Colon}},
  volume = {5},
  journal = {Gastroenterology},
  author = {Wang, Yunwei and Antonopoulos, Dionysios and Zhu, Xiaorong and Lichtenstein, Lev and Drabik, Kenneth and Alverdy, John C and Meyer, Folker and Young, Vincent and Chang, Eugene B},
  year = {2009}
}

      

      



      5. 

    5. 




 Frank Oliver Glockner,  Victor Markowitz,  Nikos Kyrpides,  Folker Meyer,  Linda Amaral-Zettler, and  James Cole.

Flash Updates of GSC projects (GSC8 Meeting).


  DOE Joint Genome Institute (JGI), LBNL (Lawrence Berkeley National ….
  


2009.







      
  BibTeX

  
      @techreport{glockner_flash_2009,
  title = {Flash {Updates} of {GSC} projects ({GSC8} {Meeting})},
  institution = {DOE Joint Genome Institute (JGI), LBNL (Lawrence Berkeley National …},
  author = {Glockner, Frank Oliver and Markowitz, Victor and Kyrpides, Nikos and Meyer, Folker and Amaral-Zettler, Linda and Cole, James},
  year = {2009}
}

      

      



      6. 

    6. 




 Dawn Field,  Iddo Friedberg,  Peter Sterk,  Renzo Kottmann,  Frank Oliver Glöckner,  Lynette Hirschman,  George M Garrity,  Guy Cochrane,  John Wooley, and  Jack Gilbert.

Meeting Report:“Metagenomics, Metadata and Meta-analysis”(M3) Special Interest Group at ISMB 2009.


  Standards in genomic sciences.
  


2009.







      
  BibTeX

  
      @article{field_meeting_2009-5,
  title = {Meeting {Report}:“{Metagenomics}, {Metadata} and {Meta}-analysis”({M3}) {Special} {Interest} {Group} at {ISMB} 2009},
  volume = {1},
  journal = {Standards in genomic sciences},
  author = {Field, Dawn and Friedberg, Iddo and Sterk, Peter and Kottmann, Renzo and Glöckner, Frank Oliver and Hirschman, Lynette and Garrity, George M and Cochrane, Guy and Wooley, John and Gilbert, Jack},
  year = {2009},
  note = {Publisher: BioMed Central}
}

      

      



      7. 

    7. 




 F. E. Angly,  D. Willner,  A. Prieto-Davo,  R. A. Edwards,  R. Schmieder,  R. Vega-Thurber,  D. A. Antonopoulos,  K. Barott,  M. T. Cottrell,  C. Desnues,  E. A. Dinsdale,  M. Furlan,  M. Haynes,  M. R. Henn,  Y. Hu,  D. L. Kirchman,  T. McDole,  J. D. McPherson,  Folker Meyer,  R. M. Miller,  E. Mundt,  R. K. Naviaux,  B. Rodriguez-Mueller,  R. Stevens,  L. Wegley,  L. Zhang,  B. Zhu, and  F. Rohwer.

The GAAS metagenomic tool and its estimations of viral and microbial average genome size in four major biomes.


  PLoS Comput Biol.
  


2009.



  [doi]


[url]




      
  BibTeX

  
      @article{angly_gaas_2009-2,
  title = {The {GAAS} metagenomic tool and its estimations of viral and microbial average genome size in four major biomes},
  volume = {5},
  url = {http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=20011103},
  doi = {10.1371/journal.pcbi.1000593},
  journal = {PLoS Comput Biol},
  author = {Angly, F. E. and Willner, D. and Prieto-Davo, A. and Edwards, R. A. and Schmieder, R. and Vega-Thurber, R. and Antonopoulos, D. A. and Barott, K. and Cottrell, M. T. and Desnues, C. and Dinsdale, E. A. and Furlan, M. and Haynes, M. and Henn, M. R. and Hu, Y. and Kirchman, D. L. and McDole, T. and McPherson, J. D. and Meyer, Folker and Miller, R. M. and Mundt, E. and Naviaux, R. K. and Rodriguez-Mueller, B. and Stevens, R. and Wegley, L. and Zhang, L. and Zhu, B. and Rohwer, F.},
  year = {2009},
  note = {Type: Journal Article}
}

      

      



      8. 

    8. 




 T. Bekel,  K. Henckel,  H. Kuster,  Folker Meyer,  V. Mittard Runte,  H. Neuweger,  D. Paarmann,  O. Rupp,  M. Zakrzewski,  A. Puhler,  J. Stoye, and  A. Goesmann.

The Sequence Analysis and Management System – SAMS-2.0: data management and sequence analysis adapted to changing requirements from traditional sanger sequencing to ultrafast sequencing technologies.


  J Biotechnol.
  


2009.



  [doi]


[url]




      
  BibTeX

  
      @article{bekel_sequence_2009-2,
  title = {The {Sequence} {Analysis} and {Management} {System} – {SAMS}-2.0: data management and sequence analysis adapted to changing requirements from traditional sanger sequencing to ultrafast sequencing technologies},
  volume = {140},
  url = {https://www.ncbi.nlm.nih.gov/pubmed/19297685},
  doi = {10.1016/j.jbiotec.2009.01.006},
  journal = {J Biotechnol},
  author = {Bekel, T. and Henckel, K. and Kuster, H. and Meyer, Folker and Mittard Runte, V. and Neuweger, H. and Paarmann, D. and Rupp, O. and Zakrzewski, M. and Puhler, A. and Stoye, J. and Goesmann, A.},
  year = {2009},
  note = {Type: Journal Article},
  keywords = {Bacterial Genomics Information Management/*methods Information Storage and Retrieval/*methods Oligonucleotide Array Sequence Analysis Sequence Analysis, Cluster Analysis Computational Biology Databases, DNA/*methods *Software User-Computer Interface, Genetic Expressed Sequence Tags Gene Library *Genome}
}

      

      



    

    2008
    

    1. 




 S. M. Sievert,  K. A. Scott,  M. G. Klotz,  P. S. G. Chain,  L. J. Hauser,  J. Hemp,  M. Hugler,  M. Land,  A. Lapidus,  F. W. Larimer,  S. Lucas,  S. A. Malfatti,  Folker Meyer,  I. T. Paulsen,  Q. Ren,  J. Simon, and  U. S. F. Genom Class.

Genome of the epsilonproteobacterial chemolithoautotroph Sulfurimonas denitrificans.


  Applied and Environmental Microbiology.
  


2008.



  [doi]





      
  BibTeX

  
      @article{sievert_genome_2008,
  title = {Genome of the epsilonproteobacterial chemolithoautotroph {Sulfurimonas} denitrificans},
  volume = {74},
  doi = {10.1128/aem.01844-07},
  journal = {Applied and Environmental Microbiology},
  author = {Sievert, S. M. and Scott, K. A. and Klotz, M. G. and Chain, P. S. G. and Hauser, L. J. and Hemp, J. and Hugler, M. and Land, M. and Lapidus, A. and Larimer, F. W. and Lucas, S. and Malfatti, S. A. and Meyer, Folker and Paulsen, I. T. and Ren, Q. and Simon, J. and Class, U. S. F. Genom},
  year = {2008},
  note = {Type: Journal Article}
}

      

      



      2. 

    2. 




 Folker Meyer,  D. Paarmann,  M. D’Souza,  R. Olson,  E. M. Glass,  M. Kubal,  T. Paczian,  A. Rodriguez,  R. Stevens,  A. Wilke,  J. Wilkening, and  R. A. Edwards.

The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes.


  BMC Bioinformatics.
  


2008.



  [doi]


[url]




      
  BibTeX

  
      @article{meyer_metagenomics_2008,
  title = {The metagenomics {RAST} server - a public resource for the automatic phylogenetic and functional analysis of metagenomes},
  volume = {9},
  url = {http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=18803844},
  doi = {10.1186/1471-2105-9-386},
  journal = {BMC Bioinformatics},
  author = {Meyer, Folker and Paarmann, D. and D'Souza, M. and Olson, R. and Glass, E. M. and Kubal, M. and Paczian, T. and Rodriguez, A. and Stevens, R. and Wilke, A. and Wilkening, J. and Edwards, R. A.},
  year = {2008},
  note = {Type: Journal Article}
}

      

      



      3. 

    3. 




 G. M. Garrity,  D. Field,  N. Kyrpides,  L. Hirschman,  S. A. Sansone,  S. Angiuoli,  J. R. Cole,  F. O. Glockner,  E. Kolker,  G. Kowalchuk,  M. A. Moran,  D. Ussery, and  O. White.

Toward a standards-compliant genomic and metagenomic publication record.


  Omics.
  


2008.



  [doi]


[url]




      
  BibTeX

  
      @article{garrity_toward_2008,
  title = {Toward a standards-compliant genomic and metagenomic publication record},
  volume = {12},
  url = {http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=18564916},
  doi = {10.1089/omi.2008.A2B2},
  journal = {Omics},
  author = {Garrity, G. M. and Field, D. and Kyrpides, N. and Hirschman, L. and Sansone, S. A. and Angiuoli, S. and Cole, J. R. and Glockner, F. O. and Kolker, E. and Kowalchuk, G. and Moran, M. A. and Ussery, D. and White, O.},
  year = {2008},
  note = {Type: Journal Article}
}

      

      



      4. 

    4. 




 D. Field,  G. Garrity,  T. Gray,  N. Morrison,  J. Selengut,  P. Sterk,  T. Tatusova,  N. Thomson,  M. J. Allen,  S. V. Angiuoli,  M. Ashburner,  N. Axelrod,  S. Baldauf,  S. Ballard,  J. Boore,  G. Cochrane,  J. Cole,  P. Dawyndt,  P. De Vos,  C. DePamphilis,  R. Edwards,  N. Faruque,  R. Feldman,  J. Gilbert,  P. Gilna,  F. O. Glockner,  P. Goldstein,  R. Guralnick,  D. Haft,  D. Hancock,  H. Hermjakob,  C. Hertz-Fowler,  P. Hugenholtz,  I. Joint,  L. Kagan,  M. Kane,  J. Kennedy,  G. Kowalchuk,  R. Kottmann,  E. Kolker,  S. Kravitz,  N. Kyrpides,  J. Leebens-Mack,  S. E. Lewis,  K. Li,  A. L. Lister,  P. Lord,  N. Maltsev,  V. Markowitz,  J. Martiny,  B. Methe,  I. Mizrachi,  R. Moxon,  K. Nelson,  J. Parkhill,  L. Proctor,  O. White,  S. A. Sansone,  A. Spiers,  R. Stevens,  P. Swift,  C. Taylor,  Y. Tateno,  A. Tett,  S. Turner,  D. Ussery,  B. Vaughan,  N. Ward,  T. Whetzel,  I. San Gil,  G. Wilson, and  A. Wipat.

The minimum information about a genome sequence (MIGS) specification.


  Nat Biotechnol.
  


2008.



  [doi]


[url]




      
  BibTeX

  
      @article{field_minimum_2008,
  title = {The minimum information about a genome sequence ({MIGS}) specification},
  volume = {26},
  url = {http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=18464787},
  doi = {10.1038/nbt1360},
  journal = {Nat Biotechnol},
  author = {Field, D. and Garrity, G. and Gray, T. and Morrison, N. and Selengut, J. and Sterk, P. and Tatusova, T. and Thomson, N. and Allen, M. J. and Angiuoli, S. V. and Ashburner, M. and Axelrod, N. and Baldauf, S. and Ballard, S. and Boore, J. and Cochrane, G. and Cole, J. and Dawyndt, P. and De Vos, P. and DePamphilis, C. and Edwards, R. and Faruque, N. and Feldman, R. and Gilbert, J. and Gilna, P. and Glockner, F. O. and Goldstein, P. and Guralnick, R. and Haft, D. and Hancock, D. and Hermjakob, H. and Hertz-Fowler, C. and Hugenholtz, P. and Joint, I. and Kagan, L. and Kane, M. and Kennedy, J. and Kowalchuk, G. and Kottmann, R. and Kolker, E. and Kravitz, S. and Kyrpides, N. and Leebens-Mack, J. and Lewis, S. E. and Li, K. and Lister, A. L. and Lord, P. and Maltsev, N. and Markowitz, V. and Martiny, J. and Methe, B. and Mizrachi, I. and Moxon, R. and Nelson, K. and Parkhill, J. and Proctor, L. and White, O. and Sansone, S. A. and Spiers, A. and Stevens, R. and Swift, P. and Taylor, C. and Tateno, Y. and Tett, A. and Turner, S. and Ussery, D. and Vaughan, B. and Ward, N. and Whetzel, T. and San Gil, I. and Wilson, G. and Wipat, A.},
  year = {2008},
  note = {Type: Journal Article}
}

      

      



      5. 

    5. 




 R. K. Aziz,  D. Bartels,  A. A. Best,  M. DeJongh,  T. Disz,  R. A. Edwards,  K. Formsma,  S. Gerdes,  E. M. Glass,  M. Kubal,  Folker Meyer,  G. J. Olsen,  R. Olson,  A. L. Osterman,  R. A. Overbeek,  L. K. McNeil,  D. Paarmann,  T. Paczian,  B. Parrello,  G. D. Pusch,  C. Reich,  R. Stevens,  O. Vassieva,  V. Vonstein,  A. Wilke, and  O. Zagnitko.

The RAST server: Rapid annotations using subsystems technology.


  BMC Genomics.
  


2008.



  [doi]





      
  BibTeX

  
      @article{aziz_rast_2008,
  title = {The {RAST} server: {Rapid} annotations using subsystems technology},
  volume = {9},
  doi = {10.1186/1471-2164-9-75},
  journal = {BMC Genomics},
  author = {Aziz, R. K. and Bartels, D. and Best, A. A. and DeJongh, M. and Disz, T. and Edwards, R. A. and Formsma, K. and Gerdes, S. and Glass, E. M. and Kubal, M. and Meyer, Folker and Olsen, G. J. and Olson, R. and Osterman, A. L. and Overbeek, R. A. and McNeil, L. K. and Paarmann, D. and Paczian, T. and Parrello, B. and Pusch, G. D. and Reich, C. and Stevens, R. and Vassieva, O. and Vonstein, V. and Wilke, A. and Zagnitko, O.},
  year = {2008},
  note = {Type: Journal Article}
}

      

      



      6. 

    6. 




 R. K. Aziz,  D. Bartels,  A. A. Best,  M. DeJongh,  T. Disz,  R. A. Edwards,  K. Formsma,  S. Gerdes,  E. M. Glass,  M. Kubal,  Folker Meyer,  G. J. Olsen,  R. Olson,  A. L. Osterman,  R. A. Overbeek,  L. K. McNeil,  D. Paarmann,  T. Paczian,  B. Parrello,  G. D. Pusch,  C. Reich,  R. Stevens,  O. Vassieva,  V. Vonstein,  A. Wilke, and  O. Zagnitko.

The RAST Server: Rapid Annotations using Subsystems Technology.


  BMC Genomics.
  


2008.







      
  BibTeX

  
      @article{aziz_rast_2008-1,
  title = {The {RAST} {Server}: {Rapid} {Annotations} using {Subsystems} {Technology}},
  journal = {BMC Genomics},
  author = {Aziz, R. K. and Bartels, D. and Best, A. A. and DeJongh, M. and Disz, T. and Edwards, R. A. and Formsma, K. and Gerdes, S. and Glass, E. M. and Kubal, M. and Meyer, Folker and Olsen, G. J. and Olson, R. and Osterman, A. L. and Overbeek, R. A. and McNeil, L. K. and Paarmann, D. and Paczian, T. and Parrello, B. and Pusch, G. D. and Reich, C. and Stevens, R. and Vassieva, O. and Vonstein, V. and Wilke, A. and Zagnitko, O.},
  year = {2008},
  note = {Type: Journal Article}
}

      

      



      7. 

    7. 




 Scott E Battle,  Folker Meyer,  Jordi Rello,  Vanderlene L Kung, and  Alan R Hauser.

Hybrid pathogenicity island PAGI-5 contributes to the highly virulent phenotype of a Pseudomonas aeruginosa isolate in mammals.


  Journal of bacteriology.
  


2008.







      
  BibTeX

  
      @article{battle_hybrid_2008-1,
  title = {Hybrid pathogenicity island {PAGI}-5 contributes to the highly virulent phenotype of a {Pseudomonas} aeruginosa isolate in mammals},
  volume = {190},
  journal = {Journal of bacteriology},
  author = {Battle, Scott E and Meyer, Folker and Rello, Jordi and Kung, Vanderlene L and Hauser, Alan R},
  year = {2008},
  note = {Publisher: American Society for Microbiology}
}

      

      



      8. 

    8. 




 Francesca Mela,  Kathrin Fritsche,  Hidde Boersma,  Jan D Van Elsas,  Daniela Bartels,  Folker Meyer,  Wietse De Boer,  Johannes A Van Veen, and  Johan HJ Leveau.

Comparative genomics of the pIPO2/pSB102 family of environmental plasmids: sequence, evolution, and ecology of pTer331 isolated from Collimonas fungivorans Ter331.


  FEMS microbiology ecology.
  


2008.







      
  BibTeX

  
      @article{mela_comparative_2008-1,
  title = {Comparative genomics of the {pIPO2}/{pSB102} family of environmental plasmids: sequence, evolution, and ecology of {pTer331} isolated from {Collimonas} fungivorans {Ter331}},
  volume = {66},
  journal = {FEMS microbiology ecology},
  author = {Mela, Francesca and Fritsche, Kathrin and Boersma, Hidde and Van Elsas, Jan D and Bartels, Daniela and Meyer, Folker and De Boer, Wietse and Van Veen, Johannes A and Leveau, Johan HJ},
  year = {2008},
  note = {Publisher: Blackwell Publishing Ltd Oxford, UK}
}

      

      



      9. 

    9. 




 Renzo Kottmann,  Tanya Gray,  Sean Murphy,  Leonid Kagan,  Saul Kravitz,  Thierry Lombardot,  Dawn Field,  Frank Oliver Glöckner, and  Genomic Standards Consortium.

A standard MIGS/MIMS compliant XML Schema: toward the development of the Genomic Contextual Data Markup Language (GCDML).


  Omics a journal of integrative biology.
  


2008.







      
  BibTeX

  
      @article{kottmann_standard_2008-1,
  title = {A standard {MIGS}/{MIMS} compliant {XML} {Schema}: toward the development of the {Genomic} {Contextual} {Data} {Markup} {Language} ({GCDML})},
  volume = {12},
  journal = {Omics a journal of integrative biology},
  author = {Kottmann, Renzo and Gray, Tanya and Murphy, Sean and Kagan, Leonid and Kravitz, Saul and Lombardot, Thierry and Field, Dawn and Glöckner, Frank Oliver and Consortium, Genomic Standards},
  year = {2008},
  note = {Publisher: Mary Ann Liebert, Inc. 140 Huguenot Street, 3rd Floor New Rochelle, NY 10801 …}
}

      

      



      10. 

    10. 




 Francesca Mela,  Kathrin Fritsche,  Hidde Boersma,  Jan D van Elsas,  Daniela Bartels,  Folker Meyer,  Wietse de Boer,  Johannes A van Veen, and  Johan HJ Leveau.

Collimonas fungivorans Ter331.



2008.







      
  BibTeX

  
      @article{mela_collimonas_2008,
  title = {Collimonas fungivorans {Ter331}},
  author = {Mela, Francesca and Fritsche, Kathrin and Boersma, Hidde and van Elsas, Jan D and Bartels, Daniela and Meyer, Folker and de Boer, Wietse and van Veen, Johannes A and Leveau, Johan HJ},
  year = {2008}
}

      

      



      11. 

    11. 




 K. H. Gartemann,  B. Abt,  T. Bekel,  A. Burger,  J. Engemann,  M. Flugel,  L. Gaigalat,  A. Goesmann,  I. Grafen,  J. Kalinowski,  O. Kaup,  O. Kirchner,  L. Krause,  B. Linke,  A. McHardy,  Folker Meyer,  S. Pohle,  C. Ruckert,  S. Schneiker,  E. M. Zellermann,  A. Puhler,  R. Eichenlaub,  O. Kaiser, and  D. Bartels.

The genome sequence of the tomato-pathogenic actinomycete Clavibacter michiganensis subsp. michiganensis NCPPB382 reveals a large island involved in pathogenicity.


  J Bacteriol.
  


2008.



  [doi]


[url]




      
  BibTeX

  
      @article{gartemann_genome_2008-2,
  title = {The genome sequence of the tomato-pathogenic actinomycete {Clavibacter} michiganensis subsp. michiganensis {NCPPB382} reveals a large island involved in pathogenicity},
  volume = {190},
  url = {http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=18192381},
  doi = {10.1128/JB.01595-07},
  journal = {J Bacteriol},
  author = {Gartemann, K. H. and Abt, B. and Bekel, T. and Burger, A. and Engemann, J. and Flugel, M. and Gaigalat, L. and Goesmann, A. and Grafen, I. and Kalinowski, J. and Kaup, O. and Kirchner, O. and Krause, L. and Linke, B. and McHardy, A. and Meyer, Folker and Pohle, S. and Ruckert, C. and Schneiker, S. and Zellermann, E. M. and Puhler, A. and Eichenlaub, R. and Kaiser, O. and Bartels, D.},
  year = {2008},
  note = {Type: Journal Article},
  keywords = {Bacterial/genetics *Genome, Actinobacteria/*genetics/pathogenicity Base Composition/genetics DNA, Bacterial Genomic Islands/genetics Lycopersicon esculentum/*microbiology Models, Bacterial/chemistry/*genetics Electrophoresis, DNA Serine Endopeptidases/genetics, Gel, Genetic Molecular Sequence Data Operon/genetics Plasmids/genetics Sequence Analysis, Pulsed-Field Genes}
}

      

      



      12. 

    12. 




 R. Gross,  C. A. Guzman,  M. Sebaihia,  Vapm dos Santos,  D. H. Pieper,  R. Koebnik,  M. Lechner,  D. Bartels,  J. Buhrmester,  J. V. Choudhuri,  T. Ebensen,  L. Gaigalat,  S. Herrmann,  A. N. Khachane,  C. Larisch,  S. Link,  B. Linke,  Folker Meyer,  S. Mormann,  D. Nakunst,  C. Rukert,  S. Schneiker-Bekel,  K. Schulze,  F. J. Vorholter,  T. Yevsa,  J. T. Engle,  W. E. Goldman,  A. Puhler,  U. B. Gobel,  A. Goesmann,  H. Blocker,  O. Kaiser, and  R. Martinez-Arias.

The missing link: Bordetella petrii is endowed with both the metabolic versatility of environmental bacteria and virulence traits of pathogenic Bordetellae.


  BMC Genomics.
  


2008.



  [doi]





      
  BibTeX

  
      @article{gross_missing_2008-2,
  title = {The missing link: {Bordetella} petrii is endowed with both the metabolic versatility of environmental bacteria and virulence traits of pathogenic {Bordetellae}},
  volume = {9},
  doi = {10.1186/1471-2164-9-449},
  journal = {BMC Genomics},
  author = {Gross, R. and Guzman, C. A. and Sebaihia, M. and dos Santos, Vapm and Pieper, D. H. and Koebnik, R. and Lechner, M. and Bartels, D. and Buhrmester, J. and Choudhuri, J. V. and Ebensen, T. and Gaigalat, L. and Herrmann, S. and Khachane, A. N. and Larisch, C. and Link, S. and Linke, B. and Meyer, Folker and Mormann, S. and Nakunst, D. and Rukert, C. and Schneiker-Bekel, S. and Schulze, K. and Vorholter, F. J. and Yevsa, T. and Engle, J. T. and Goldman, W. E. and Puhler, A. and Gobel, U. B. and Goesmann, A. and Blocker, H. and Kaiser, O. and Martinez-Arias, R.},
  year = {2008},
  note = {Type: Journal Article}
}

      

      



    

    2007
    

    1. 




 S. Schneiker,  O. Perlova,  O. Kaiser,  K. Gerth,  A. Alici,  M. O. Altmeyer,  D. Bartels,  T. Bekel,  S. Beyer,  E. Bode,  H. B. Bode,  C. J. Bolten,  J. V. Choudhuri,  S. Doss,  Y. A. Elnakady,  B. Frank,  L. Gaigalat,  A. Goesmann,  C. Groeger,  F. Gross,  L. Jelsbak,  J. Kalinowski,  C. Kegler,  T. Knauber,  S. Konietzny,  M. Kopp,  L. Krause,  D. Krug,  B. Linke,  T. Mahmud,  R. Martinez-Arias,  A. C. McHardy,  M. Merai,  Folker Meyer,  S. Mormann,  J. Munoz-Dorado,  J. Perez,  S. Pradella,  S. Rachid,  G. Raddatz,  F. Rosenau,  C. Rueckert,  F. Sasse,  M. Scharfe,  S. C. Schuster,  G. Suen,  A. Treuner-Lange,  G. J. Velicer,  F. J. Vorholter,  K. J. Weissman,  R. Dwelch,  S. C. Wenzel,  D. E. Whitworth,  S. Wilhelm,  C. Wittmann,  H. Blocker,  A. Puhler, and  R. Mueller.

Complete genome sequence of the myxobacterium Sorangium cellulosum.


  Nat Biotechnol.
  


2007.



  [doi]





      
  BibTeX

  
      @article{schneiker_complete_2007,
  title = {Complete genome sequence of the myxobacterium {Sorangium} cellulosum},
  volume = {25},
  doi = {10.1038/nbt1354},
  journal = {Nat Biotechnol},
  author = {Schneiker, S. and Perlova, O. and Kaiser, O. and Gerth, K. and Alici, A. and Altmeyer, M. O. and Bartels, D. and Bekel, T. and Beyer, S. and Bode, E. and Bode, H. B. and Bolten, C. J. and Choudhuri, J. V. and Doss, S. and Elnakady, Y. A. and Frank, B. and Gaigalat, L. and Goesmann, A. and Groeger, C. and Gross, F. and Jelsbak, L. and Kalinowski, J. and Kegler, C. and Knauber, T. and Konietzny, S. and Kopp, M. and Krause, L. and Krug, D. and Linke, B. and Mahmud, T. and Martinez-Arias, R. and McHardy, A. C. and Merai, M. and Meyer, Folker and Mormann, S. and Munoz-Dorado, J. and Perez, J. and Pradella, S. and Rachid, S. and Raddatz, G. and Rosenau, F. and Rueckert, C. and Sasse, F. and Scharfe, M. and Schuster, S. C. and Suen, G. and Treuner-Lange, A. and Velicer, G. J. and Vorholter, F. J. and Weissman, K. J. and Dwelch, R. and Wenzel, S. C. and Whitworth, D. E. and Wilhelm, S. and Wittmann, C. and Blocker, H. and Puhler, A. and Mueller, R.},
  year = {2007},
  note = {Type: Journal Article}
}

      

      



      2. 

    2. 




 R. Overbeek,  D. Bartels,  V. Vonstein, and  Folker Meyer.

Annotation of Bacterial and Archaeal Genomes: Improving Accuracy and Consistency.


  Chemical Reviews.
  


2007.







      
  BibTeX

  
      @article{overbeek_annotation_2007,
  title = {Annotation of {Bacterial} and {Archaeal} {Genomes}: {Improving} {Accuracy} and {Consistency}},
  journal = {Chemical Reviews},
  author = {Overbeek, R. and Bartels, D. and Vonstein, V. and Meyer, Folker},
  year = {2007},
  note = {Type: Journal Article}
}

      

      



      3. 

    3. 




 L. K. McNeil,  C. Reich,  R. K. Aziz,  D. Bartels,  M. Cohoon,  T. Disz,  R. A. Edwards,  S. Gerdes,  K. Hwang,  M. Kubal,  G. R. Margaryan,  Folker Meyer,  W. Mihalo,  G. J. Olsen,  R. Olson,  A. Osterman,  D. Paarmann,  T. Paczian,  B. Parrello,  G. D. Pusch,  D. A. Rodionov,  X. H. Shi,  O. Vassieva,  V. Vonstein,  O. Zagnitko,  F. F. Xia,  J. Zinner,  R. Overbeek, and  R. Stevens.

The National Microbial Pathogen Database Resource (NMPDR): a genomics platform based on subsystem annotation.


  Nucleic Acids Research.
  


2007.



  [doi]





      
  BibTeX

  
      @article{mcneil_national_2007,
  title = {The {National} {Microbial} {Pathogen} {Database} {Resource} ({NMPDR}): a genomics platform based on subsystem annotation},
  volume = {35},
  doi = {10.1093/nar/gkl947},
  journal = {Nucleic Acids Research},
  author = {McNeil, L. K. and Reich, C. and Aziz, R. K. and Bartels, D. and Cohoon, M. and Disz, T. and Edwards, R. A. and Gerdes, S. and Hwang, K. and Kubal, M. and Margaryan, G. R. and Meyer, Folker and Mihalo, W. and Olsen, G. J. and Olson, R. and Osterman, A. and Paarmann, D. and Paczian, T. and Parrello, B. and Pusch, G. D. and Rodionov, D. A. and Shi, X. H. and Vassieva, O. and Vonstein, V. and Zagnitko, O. and Xia, F. F. and Zinner, J. and Overbeek, R. and Stevens, R.},
  year = {2007},
  note = {Type: Journal Article}
}

      

      



      4. 

    4. 




 L. Krause,  A. C. McHardy,  T. W. Nattkemper,  A. Puhler,  J. Stoye, and  Folker Meyer.

GISMO - gene identification using a support vector machine for ORF classification.


  Nucleic Acids Research.
  


2007.



  [doi]





      
  BibTeX

  
      @article{krause_gismo_2007,
  title = {{GISMO} - gene identification using a support vector machine for {ORF} classification},
  volume = {35},
  doi = {10.1093/nar/gkl1083},
  journal = {Nucleic Acids Research},
  author = {Krause, L. and McHardy, A. C. and Nattkemper, T. W. and Puhler, A. and Stoye, J. and Meyer, Folker},
  year = {2007},
  note = {Type: Journal Article}
}

      

      



      5. 

    5. 




 Lutz Krause,  Alice C McHardy,  Tim W Nattkemper,  Alfred Pühler,  Jens Stoye, and  Folker Meyer.

GISMO—gene identification using a support vector machine for ORF classification.


  Nucleic acids research.
  


2007.







      
  BibTeX

  
      @article{krause_gismogene_2007,
  title = {{GISMO}—gene identification using a support vector machine for {ORF} classification},
  volume = {35},
  journal = {Nucleic acids research},
  author = {Krause, Lutz and McHardy, Alice C and Nattkemper, Tim W and Pühler, Alfred and Stoye, Jens and Meyer, Folker},
  year = {2007},
  note = {Publisher: Oxford University Press}
}

      

      



      6. 

    6. 




 Ross Overbeek,  Daniela Bartels,  Veronika Vonstein, and  Folker Meyer.

Annotation of bacterial and archaeal genomes: improving accuracy and consistency.


  Chemical reviews.
  


2007.







      
  BibTeX

  
      @article{overbeek_annotation_2007-1,
  title = {Annotation of bacterial and archaeal genomes: improving accuracy and consistency},
  volume = {107},
  journal = {Chemical reviews},
  author = {Overbeek, Ross and Bartels, Daniela and Vonstein, Veronika and Meyer, Folker},
  year = {2007},
  note = {Publisher: American Chemical Society}
}

      

      



      7. 

    7. 




 H. Kuster,  A. Becker,  C. Firnhaber,  N. Hohnjec,  K. Manthey,  A. M. Perlick,  T. Bekel,  M. Dondrup,  K. Henckel,  A. Goesmann,  Folker Meyer,  D. Wipf,  N. Requena,  U. Hildebrandt,  R. Hampp,  U. Nehls,  F. Krajinski,  P. Franken, and  A. Puhler.

Development of bioinformatic tools to support EST-sequencing, in silico- and microarray-based transcriptome profiling in mycorrhizal symbioses.


  Phytochemistry.
  


2007.



  [doi]


[url]




      
  BibTeX

  
      @article{kuster_development_2007-2,
  title = {Development of bioinformatic tools to support {EST}-sequencing, in silico- and microarray-based transcriptome profiling in mycorrhizal symbioses},
  volume = {68},
  url = {https://www.ncbi.nlm.nih.gov/pubmed/17081576},
  doi = {10.1016/j.phytochem.2006.09.026},
  journal = {Phytochemistry},
  author = {Kuster, H. and Becker, A. and Firnhaber, C. and Hohnjec, N. and Manthey, K. and Perlick, A. M. and Bekel, T. and Dondrup, M. and Henckel, K. and Goesmann, A. and Meyer, Folker and Wipf, D. and Requena, N. and Hildebrandt, U. and Hampp, R. and Nehls, U. and Krajinski, F. and Franken, P. and Puhler, A.},
  year = {2007},
  note = {Type: Journal Article},
  keywords = {Computational Biology/*methods *Expressed Sequence Tags Mycorrhizae/*genetics Oligonucleotide Array Sequence Analysis/*methods Symbiosis/*genetics Transcription, Genetic/*genetics}
}

      

      



    

    2006
    

    1. 




 K. M. Scott,  S. M. Sievert,  F. N. Abril,  L. A. Ball,  C. J. Barrett,  R. A. Blake,  A. J. Boller,  P. S. G. Chain,  J. A. Clark,  C. R. Davis,  C. Detter,  K. F. Do,  K. P. Dobrinski,  B. I. Faza,  K. A. Fitzpatrick,  S. K. Freyermuth,  T. L. Harmer,  L. J. Hauser,  M. Hugler,  C. A. Kerfeld,  M. G. Klotz,  W. W. Kong,  M. Land,  A. Lapidus,  F. W. Larimer,  D. L. Longo,  S. Lucas,  S. A. Malfatti,  S. E. Massey,  D. D. Martin,  Z. McCuddin,  Folker Meyer,  J. L. Moore,  L. H. Ocampo,  J. H. Paul,  I. T. Paulsen,  D. K. Reep,  Q. H. Ren,  R. L. Ross,  P. Y. Sato,  P. Thomas,  L. E. Tinkham, and  G. T. Zeruth.

The genome of deep-sea vent chemolithoautotroph Thiomicrospira crunogena XCL-2.


  Plos Biology.
  


2006.



  [doi]





      
  BibTeX

  
      @article{scott_genome_2006,
  title = {The genome of deep-sea vent chemolithoautotroph {Thiomicrospira} crunogena {XCL}-2},
  volume = {4},
  doi = {10.1371/journal.pbio.0040383},
  journal = {Plos Biology},
  author = {Scott, K. M. and Sievert, S. M. and Abril, F. N. and Ball, L. A. and Barrett, C. J. and Blake, R. A. and Boller, A. J. and Chain, P. S. G. and Clark, J. A. and Davis, C. R. and Detter, C. and Do, K. F. and Dobrinski, K. P. and Faza, B. I. and Fitzpatrick, K. A. and Freyermuth, S. K. and Harmer, T. L. and Hauser, L. J. and Hugler, M. and Kerfeld, C. A. and Klotz, M. G. and Kong, W. W. and Land, M. and Lapidus, A. and Larimer, F. W. and Longo, D. L. and Lucas, S. and Malfatti, S. A. and Massey, S. E. and Martin, D. D. and McCuddin, Z. and Meyer, Folker and Moore, J. L. and Ocampo, L. H. and Paul, J. H. and Paulsen, I. T. and Reep, D. K. and Ren, Q. H. and Ross, R. L. and Sato, P. Y. and Thomas, P. and Tinkham, L. E. and Zeruth, G. T.},
  year = {2006},
  note = {Type: Journal Article}
}

      

      



      2. 

    2. 




 S. Schneiker,  Vapm dos Santos,  D. Bartels,  T. Bekel,  M. Brecht,  J. Buhrmester,  T. N. Chernikova,  R. Denaro,  M. Ferrer,  C. Gertler,  A. Goesmann,  O. V. Golyshina,  F. Kaminski,  A. N. Khachane,  S. Lang,  B. Linke,  A. C. McHardy,  Folker Meyer,  T. Nechitaylo,  A. Puhler,  D. Regenhardt,  O. Rupp,  J. S. Sabirova,  W. Selbitschka,  M. M. Yakimov,  K. N. Timmis,  F. J. Vorholter,  S. Weidner,  O. Kaiser, and  P. N. Golyshin.

Genome sequence of the ubiquitous hydrocarbon-degrading marine bacterium Alcanivorax borkumensis.


  Nat Biotechnol.
  


2006.



  [doi]





      
  BibTeX

  
      @article{schneiker_genome_2006,
  title = {Genome sequence of the ubiquitous hydrocarbon-degrading marine bacterium {Alcanivorax} borkumensis},
  volume = {24},
  doi = {10.1038/nbt1232},
  journal = {Nat Biotechnol},
  author = {Schneiker, S. and dos Santos, Vapm and Bartels, D. and Bekel, T. and Brecht, M. and Buhrmester, J. and Chernikova, T. N. and Denaro, R. and Ferrer, M. and Gertler, C. and Goesmann, A. and Golyshina, O. V. and Kaminski, F. and Khachane, A. N. and Lang, S. and Linke, B. and McHardy, A. C. and Meyer, Folker and Nechitaylo, T. and Puhler, A. and Regenhardt, D. and Rupp, O. and Sabirova, J. S. and Selbitschka, W. and Yakimov, M. M. and Timmis, K. N. and Vorholter, F. J. and Weidner, S. and Kaiser, O. and Golyshin, P. N.},
  year = {2006},
  note = {Type: Journal Article}
}

      

      



      3. 

    3. 




 N. Pobigaylo,  D. Wetter,  S. Szymczak,  U. Schiller,  S. Kurtz,  Folker Meyer,  T. W. Nattkemper, and  A. Becker.

Construction of a large signature-tagged mini-Tn5 transposon library and its application to mutagenesis of Sinorhizobium meliloti.


  Applied and Environmental Microbiology.
  


2006.



  [doi]





      
  BibTeX

  
      @article{pobigaylo_construction_2006,
  title = {Construction of a large signature-tagged mini-{Tn5} transposon library and its application to mutagenesis of {Sinorhizobium} meliloti},
  volume = {72},
  doi = {10.1128/aem.03072-05},
  journal = {Applied and Environmental Microbiology},
  author = {Pobigaylo, N. and Wetter, D. and Szymczak, S. and Schiller, U. and Kurtz, S. and Meyer, Folker and Nattkemper, T. W. and Becker, A.},
  year = {2006},
  note = {Type: Journal Article}
}

      

      



      4. 

    4. 




 B. Linke,  A. C. McHardy,  H. Neuweger,  L. Krause, and  Folker Meyer.

REGANOR: a gene prediction server for prokaryotic genomes and a database of high quality gene predictions for prokaryotes.


  Appl Bioinformatics.
  


2006.




[url]




      
  BibTeX

  
      @article{linke_reganor_2006,
  title = {{REGANOR}: a gene prediction server for prokaryotic genomes and a database of high quality gene predictions for prokaryotes},
  volume = {5},
  url = {http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=16922601},
  journal = {Appl Bioinformatics},
  author = {Linke, B. and McHardy, A. C. and Neuweger, H. and Krause, L. and Meyer, Folker},
  year = {2006},
  note = {Type: Journal Article}
}

      

      



      5. 

    5. 




 L. Krause,  N. N. Diaz,  D. Bartels,  R. A. Edwards,  A. Puhler,  F. Rohwer,  Folker Meyer, and  J. Stoye.

Finding novel genes in bacterial communities isolated from the environment.


  Bioinformatics.
  


2006.




[url]




      
  BibTeX

  
      @article{krause_finding_2006,
  title = {Finding novel genes in bacterial communities isolated from the environment},
  volume = {22},
  url = {http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=16873483},
  journal = {Bioinformatics},
  author = {Krause, L. and Diaz, N. N. and Bartels, D. and Edwards, R. A. and Puhler, A. and Rohwer, F. and Meyer, Folker and Stoye, J.},
  year = {2006},
  note = {Type: Journal Article}
}

      

      



      6. 

    6. 




 T. Hain,  C. Steinweg,  C. T. Kuenne,  A. Billion,  R. Ghai,  S. S. Chatterjee,  E. Domann,  U. Karst,  A. Goesmann,  T. Bekel,  D. Bartels,  O. Kaiser,  Folker Meyer,  A. Puhler,  B. Weisshaar,  J. Wehland,  C. Liang,  T. Dandekar,  R. Lampidis,  J. Kreft,  W. Goebel, and  T. Chakraborty.

Whole-genome sequence of Listeria welshimeri reveals common steps in genome reduction with Listeria innocua as compared to Listeria monocytogenes.


  J Bacteriol.
  


2006.



  [doi]


[url]




      
  BibTeX

  
      @article{hain_whole-genome_2006,
  title = {Whole-genome sequence of {Listeria} welshimeri reveals common steps in genome reduction with {Listeria} innocua as compared to {Listeria} monocytogenes},
  volume = {188},
  url = {http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=16936040},
  doi = {10.1128/JB.00758-06},
  journal = {J Bacteriol},
  author = {Hain, T. and Steinweg, C. and Kuenne, C. T. and Billion, A. and Ghai, R. and Chatterjee, S. S. and Domann, E. and Karst, U. and Goesmann, A. and Bekel, T. and Bartels, D. and Kaiser, O. and Meyer, Folker and Puhler, A. and Weisshaar, B. and Wehland, J. and Liang, C. and Dandekar, T. and Lampidis, R. and Kreft, J. and Goebel, W. and Chakraborty, T.},
  year = {2006},
  note = {Type: Journal Article}
}

      

      



      7. 

    7. 




 M. Bauer,  M. Kube,  H. Teeling,  M. Richter,  T. Lombardot,  E. Allers,  C. A. Wurdemann,  C. Quast,  H. Kuhl,  F. Knaust,  D. Woebken,  K. Bischof,  M. Mussmann,  J. V. Choudhuri,  Folker Meyer,  R. Reinhardt,  R. I. Amann, and  F. O. Glockner.

Whole genome analysis of the marine Bacteroidetes ’Gramella forsetii’ reveals adaptations to degradation of polymeric organic matter.


  Environ Microbiol.
  


2006.



  [doi]





      
  BibTeX

  
      @article{bauer_whole_2006,
  title = {Whole genome analysis of the marine {Bacteroidetes} '{Gramella} forsetii' reveals adaptations to degradation of polymeric organic matter},
  volume = {8},
  doi = {10.1111/j.1462-2920.2006.01152.x},
  journal = {Environ Microbiol},
  author = {Bauer, M. and Kube, M. and Teeling, H. and Richter, M. and Lombardot, T. and Allers, E. and Wurdemann, C. A. and Quast, C. and Kuhl, H. and Knaust, F. and Woebken, D. and Bischof, K. and Mussmann, M. and Choudhuri, J. V. and Meyer, Folker and Reinhardt, R. and Amann, R. I. and Glockner, F. O.},
  year = {2006},
  note = {Type: Journal Article}
}

      

      



      8. 

    8. 




 Nataliya Pobigaylo,  Danijel Wetter,  Silke Szymczak,  Ulf Schiller,  Stefan Kurtz,  Folker Meyer,  Tim W Nattkemper, and  Anke Becker.

Construction of a large signature-tagged mini-Tn 5 transposon library and its application to mutagenesis of Sinorhizobium meliloti.


  Applied and environmental microbiology.
  


2006.







      
  BibTeX

  
      @article{pobigaylo_construction_2006-1,
  title = {Construction of a large signature-tagged mini-{Tn} 5 transposon library and its application to mutagenesis of {Sinorhizobium} meliloti},
  volume = {72},
  journal = {Applied and environmental microbiology},
  author = {Pobigaylo, Nataliya and Wetter, Danijel and Szymczak, Silke and Schiller, Ulf and Kurtz, Stefan and Meyer, Folker and Nattkemper, Tim W and Becker, Anke},
  year = {2006},
  note = {Publisher: American Society for Microbiology}
}

      

      



      9. 

    9. 




 Burkhard Linke,  Alice C McHardy,  Heiko Neuweger,  Lutz Krause, and  Folker Meyer.

Reganor.


  Applied bioinformatics.
  


2006.







      
  BibTeX

  
      @article{linke_reganor_2006-1,
  title = {Reganor},
  volume = {5},
  journal = {Applied bioinformatics},
  author = {Linke, Burkhard and McHardy, Alice C and Neuweger, Heiko and Krause, Lutz and Meyer, Folker},
  year = {2006},
  note = {Publisher: Springer International Publishing}
}

      

      



      10. 

    10. 




 Folker Meyer.

Genome sequencing vs. moore’s law: Cyber challenges for the next decade.


  CTWatch Quarterly.
  


2006.







      
  BibTeX

  
      @article{meyer_genome_2006,
  title = {Genome sequencing vs. moore’s law: {Cyber} challenges for the next decade},
  volume = {2},
  journal = {CTWatch Quarterly},
  author = {Meyer, Folker},
  year = {2006}
}

      

      



    

    2005
    

    1. 




 A. Tauch,  O. Kaiser,  T. Hain,  A. Goesmann,  B. Weisshaar,  A. Albersmeier,  T. Bekel,  N. Bischoff,  I. Brune,  T. Chakraborty,  J. Kalinowski,  Folker Meyer,  O. Rupp,  S. Schneiker,  P. Viehoever, and  A. Puhler.

Complete genome sequence and analysis of the multiresistant nosocomial pathogen Corynebacterium jeikeium K411, a lipid-requiring bacterium of the human skin flora.


  J Bacteriol.
  


2005.



  [doi]


[url]




      
  BibTeX

  
      @article{tauch_complete_2005,
  title = {Complete genome sequence and analysis of the multiresistant nosocomial pathogen {Corynebacterium} jeikeium {K411}, a lipid-requiring bacterium of the human skin flora},
  volume = {187},
  url = {http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=15968079},
  doi = {10.1128/JB.187.13.4671-4682.2005},
  journal = {J Bacteriol},
  author = {Tauch, A. and Kaiser, O. and Hain, T. and Goesmann, A. and Weisshaar, B. and Albersmeier, A. and Bekel, T. and Bischoff, N. and Brune, I. and Chakraborty, T. and Kalinowski, J. and Meyer, Folker and Rupp, O. and Schneiker, S. and Viehoever, P. and Puhler, A.},
  year = {2005},
  note = {Type: Journal Article}
}

      

      



      2. 

    2. 




 R. Overbeek,  T. Begley,  R.M. Butler,  J.V. Choudhuri,  N. Diaz,  H.-Y. Chuang,  M. Cohoon,  V. de Crécy-Lagard,  T. Disz,  R Edwards,  M Fonstein,  E.D. Frank,  S. Gerdes,  E.M. Glass,  A. Goesmann,  L. Krause,  B. Linke,  A.C. McHardy,  Folker Meyer,  A. Hanson,  D. Iwata-Reuyl,  R. Jensen,  N. Jamshidi,  M. Kubal,  N. Larsen,  H. Neuweger,  C. Rückert,  G. J. Olsen,  R. Olson,  A. Osterman,  V. Portnoy,  G.D. Pusch,  D.A. Rodionov,  J. Steiner,  R. Stevens,  I. Thiele,  O. Vassieva,  Y. Ye,  O. Zagnitko, and  V. Vonstein.

The Subsystems Approach to Genome Annotation and its Use in the Project to Annotate 1000 Genomes.


  Nucleic Acids Res.
  


2005.







      
  BibTeX

  
      @article{overbeek_subsystems_2005,
  title = {The {Subsystems} {Approach} to {Genome} {Annotation} and its {Use} in the {Project} to {Annotate} 1000 {Genomes}},
  volume = {33},
  journal = {Nucleic Acids Res},
  author = {Overbeek, R. and Begley, T. and Butler, R.M. and Choudhuri, J.V. and Diaz, N. and Chuang, H.-Y. and Cohoon, M. and de Crécy-Lagard, V. and Disz, T. and Edwards, R and Fonstein, M and Frank, E.D. and Gerdes, S. and Glass, E.M. and Goesmann, A. and Krause, L. and Linke, B. and McHardy, A.C. and Meyer, Folker and Hanson, A. and Iwata-Reuyl, D. and Jensen, R. and Jamshidi, N. and Kubal, M. and Larsen, N. and Neuweger, H. and Rückert, C. and Olsen, G. J. and Olson, R. and Osterman, A. and Portnoy, V. and Pusch, G.D. and Rodionov, D.A. and Steiner, J. and Stevens, R. and Thiele, I. and Vassieva, O. and Ye, Y. and Zagnitko, O. and Vonstein, V.},
  year = {2005},
  note = {Type: Journal Article}
}

      

      



      3. 

    3. 




 A. Goesmann,  B. Linke,  D. Bartels,  M. Dondrup,  L. Krause,  H. Neuweger,  S. Oehm,  T. Paczian,  A. Wilke, and  Folker Meyer.

BRIGEP - the BRIDGE-based genome-transcriptome-proteome browser.


  Nucleic Acids Research.
  


2005.



  [doi]





      
  BibTeX

  
      @article{goesmann_brigep_2005,
  title = {{BRIGEP} - the {BRIDGE}-based genome-transcriptome-proteome browser},
  volume = {33},
  doi = {10.1093/nar/gki400},
  journal = {Nucleic Acids Research},
  author = {Goesmann, A. and Linke, B. and Bartels, D. and Dondrup, M. and Krause, L. and Neuweger, H. and Oehm, S. and Paczian, T. and Wilke, A. and Meyer, Folker},
  year = {2005},
  note = {Type: Journal Article}
}

      

      



      4. 

    4. 




 André Frenzel,  Katja Manthey,  Andreas M Perlick,  Folker Meyer,  Alfred Pühler,  Helge Küster, and  Franziska Krajinski.

Combined transcriptome profiling reveals a novel family of arbuscular mycorrhizal-specific Medicago truncatula lectin genes.


  Molecular plant-microbe interactions.
  


2005.







      
  BibTeX

  
      @article{frenzel_combined_2005-1,
  title = {Combined transcriptome profiling reveals a novel family of arbuscular mycorrhizal-specific {Medicago} truncatula lectin genes},
  volume = {18},
  journal = {Molecular plant-microbe interactions},
  author = {Frenzel, André and Manthey, Katja and Perlick, Andreas M and Meyer, Folker and Pühler, Alfred and Küster, Helge and Krajinski, Franziska},
  year = {2005},
  note = {Publisher: Am Phytopath Society}
}

      

      



      5. 

    5. 




 Daniela Bartels,  Sebastian Kespohl,  Stefan Albaum,  Tanja Drüke,  Alexander Goesmann,  Julia Herold,  Olaf Kaiser,  Alfred Pühler,  Friedhelm Pfeiffer,  Günter Raddatz, and  Folker Meyer.

BACCardI—a tool for the validation of genomic assemblies, assisting genome finishing and intergenome comparison.


  Bioinformatics.
  


2005.







      
  BibTeX

  
      @article{bartels_baccarditool_2005,
  title = {{BACCardI}—a tool for the validation of genomic assemblies, assisting genome finishing and intergenome comparison},
  volume = {21},
  journal = {Bioinformatics},
  author = {Bartels, Daniela and Kespohl, Sebastian and Albaum, Stefan and Drüke, Tanja and Goesmann, Alexander and Herold, Julia and Kaiser, Olaf and Pühler, Alfred and Pfeiffer, Friedhelm and Raddatz, Günter and Meyer, Folker},
  year = {2005},
  note = {Publisher: Oxford University Press}
}

      

      



      6. 

    6. 




 Alexander Goesmann,  Burkhard Linke,  Daniela Bartels,  Michael Dondrup,  Lutz Krause,  Heiko Neuweger,  Sebastian Oehm,  Tobias Paczian,  Andreas Wilke, and  Folker Meyer.

BRIGEP—the BRIDGE-based genome–transcriptome–proteome browser.


  Nucleic acids research.
  


2005.







      
  BibTeX

  
      @article{goesmann_brigepbridge-based_2005,
  title = {{BRIGEP}—the {BRIDGE}-based genome–transcriptome–proteome browser},
  volume = {33},
  journal = {Nucleic acids research},
  author = {Goesmann, Alexander and Linke, Burkhard and Bartels, Daniela and Dondrup, Michael and Krause, Lutz and Neuweger, Heiko and Oehm, Sebastian and Paczian, Tobias and Wilke, Andreas and Meyer, Folker},
  year = {2005},
  note = {Publisher: Oxford University Press}
}

      

      



      7. 

    7. 




 R. Overbeek,  T. Begley,  R. M. Butler,  J. V. Choudhuri,  H. Y. Chuang,  M. Cohoon,  V. de Crecy-Lagard,  N. Diaz,  T. Disz,  R. Edwards,  M. Fonstein,  E. D. Frank,  S. Gerdes,  E. M. Glass,  A. Goesmann,  A. Hanson,  D. Iwata-Reuyl,  R. Jensen,  N. Jamshidi,  L. Krause,  M. Kubal,  N. Larsen,  B. Linke,  A. C. McHardy,  Folker Meyer,  H. Neuweger,  G. Olsen,  R. Olson,  A. Osterman,  V. Portnoy,  G. D. Pusch,  D. A. Rodionov,  C. Ruckert,  J. Steiner,  R. Stevens,  I. Thiele,  O. Vassieva,  Y. Ye,  O. Zagnitko, and  V. Vonstein.

The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes.


  Nucleic Acids Res.
  


2005.



  [doi]





      
  BibTeX

  
      @article{overbeek_subsystems_2006,
  title = {The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes},
  volume = {33},
  doi = {10.1093/nar/gki866},
  journal = {Nucleic Acids Res},
  author = {Overbeek, R. and Begley, T. and Butler, R. M. and Choudhuri, J. V. and Chuang, H. Y. and Cohoon, M. and de Crecy-Lagard, V. and Diaz, N. and Disz, T. and Edwards, R. and Fonstein, M. and Frank, E. D. and Gerdes, S. and Glass, E. M. and Goesmann, A. and Hanson, A. and Iwata-Reuyl, D. and Jensen, R. and Jamshidi, N. and Krause, L. and Kubal, M. and Larsen, N. and Linke, B. and McHardy, A. C. and Meyer, Folker and Neuweger, H. and Olsen, G. and Olson, R. and Osterman, A. and Portnoy, V. and Pusch, G. D. and Rodionov, D. A. and Ruckert, C. and Steiner, J. and Stevens, R. and Thiele, I. and Vassieva, O. and Ye, Y. and Zagnitko, O. and Vonstein, V.},
  year = {2005},
  note = {Type: Journal Article},
  keywords = {Acyl Coenzyme A/metabolism Coenzyme A/biosynthesis Computational Biology *Genome, Archaeal *Genome, Bacterial Genomics/*methods Internet Leucine/metabolism Ribosomal Proteins/classification *Software Terminology as Topic Vocabulary, Controlled}
}

      

      



      8. 

    8. 




 F. Thieme,  R. Koebnik,  T. Bekel,  C. Berger,  J. Boch,  D. Buttner,  C. Caldana,  L. Gaigalat,  A. Goesmann,  S. Kay,  O. Kirchner,  C. Lanz,  B. Linke,  A. C. McHardy,  Folker Meyer,  G. Mittenhuber,  D. H. Nies,  U. Niesbach-Klosgen,  T. Patschkowski,  C. Ruckert,  O. Rupp,  S. Schneiker,  S. C. Schuster,  F. J. Vorholter,  E. Weber,  A. Puhler,  U. Bonas,  D. Bartels, and  O. Kaiser.

Insights into genome plasticity and pathogenicity of the plant pathogenic bacterium Xanthomonas campestris pv. vesicatoria revealed by the complete genome sequence.


  J Bacteriol.
  


2005.



  [doi]


[url]




      
  BibTeX

  
      @article{thieme_insights_2005-2,
  title = {Insights into genome plasticity and pathogenicity of the plant pathogenic bacterium {Xanthomonas} campestris pv. vesicatoria revealed by the complete genome sequence},
  volume = {187},
  url = {http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=16237009},
  doi = {10.1128/JB.187.21.7254-7266.2005},
  journal = {J Bacteriol},
  author = {Thieme, F. and Koebnik, R. and Bekel, T. and Berger, C. and Boch, J. and Buttner, D. and Caldana, C. and Gaigalat, L. and Goesmann, A. and Kay, S. and Kirchner, O. and Lanz, C. and Linke, B. and McHardy, A. C. and Meyer, Folker and Mittenhuber, G. and Nies, D. H. and Niesbach-Klosgen, U. and Patschkowski, T. and Ruckert, C. and Rupp, O. and Schneiker, S. and Schuster, S. C. and Vorholter, F. J. and Weber, E. and Puhler, A. and Bonas, U. and Bartels, D. and Kaiser, O.},
  year = {2005},
  note = {Type: Journal Article},
  keywords = {Adhesins, Bacterial Legionella pneumophila/genetics Molecular Sequence Data Plasmids/genetics Polysaccharides, Bacterial/*chemistry/*genetics Gene Order *Genome, Bacterial/genetics Base Composition Chromosomes, Bacterial/genetics Coxiella burnetii/genetics DNA, Bacterial/genetics Protein Transport/genetics *Sequence Analysis, DNA Synteny Virulence/genetics Virulence Factors/genetics Xanthomonas campestris/*genetics/physiology}
}

      

      



    

    2004
    

    1. 




 S. Rendulic,  P. Jagtap,  A. Rosinus,  M. Eppinger,  C. Baar,  C. Lanz,  H. Keller,  C. Lambert,  K. J. Evans,  A. Goesmann,  Folker Meyer,  R. E. Sockett, and  S. C. Schuster.

A predator unmasked: life cycle of Bdellovibrio bacteriovorus from a genomic perspective.


  Science.
  


2004.




[url]




      
  BibTeX

  
      @article{rendulic_predator_2004,
  title = {A predator unmasked: life cycle of {Bdellovibrio} bacteriovorus from a genomic perspective},
  volume = {303},
  url = {http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=14752164},
  journal = {Science},
  author = {Rendulic, S. and Jagtap, P. and Rosinus, A. and Eppinger, M. and Baar, C. and Lanz, C. and Keller, H. and Lambert, C. and Evans, K. J. and Goesmann, A. and Meyer, Folker and Sockett, R. E. and Schuster, S. C.},
  year = {2004},
  note = {Type: Journal Article}
}

      

      



      2. 

    2. 




 D. Bartels,  S. Kespohl,  S. Albaum,  T. Druke,  A. Goesmann,  J. Herold,  O. Kaiser,  A. Puhler,  F. Pfeiffer,  G. Raddatz,  J. Stoye,  Folker Meyer, and  S. C. Schuster.

BACCardI - a tool for the validation of genomic assemblies, assisting genome finishing and intergenome comparison.


  Bioinformatics.
  


2004.




[url]




      
  BibTeX

  
      @article{bartels_baccardi_2004,
  title = {{BACCardI} - a tool for the validation of genomic assemblies, assisting genome finishing and intergenome comparison},
  url = {http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=15514001},
  journal = {Bioinformatics},
  author = {Bartels, D. and Kespohl, S. and Albaum, S. and Druke, T. and Goesmann, A. and Herold, J. and Kaiser, O. and Puhler, A. and Pfeiffer, F. and Raddatz, G. and Stoye, J. and Meyer, Folker and Schuster, S. C.},
  year = {2004},
  note = {Type: Journal Article}
}

      

      



      3. 

    3. 




 Alice C McHardy,  Alexander Goesmann,  Alfred Pühler, and  Folker Meyer.

Development of joint application strategies for two microbial gene finders.


  Bioinformatics.
  


2004.







      
  BibTeX

  
      @article{mchardy_development_2004-1,
  title = {Development of joint application strategies for two microbial gene finders},
  volume = {20},
  journal = {Bioinformatics},
  author = {McHardy, Alice C and Goesmann, Alexander and Pühler, Alfred and Meyer, Folker},
  year = {2004},
  note = {Publisher: Oxford University Press}
}

      

      



      4. 

    4. 




 Alice C McHardy,  Alfred Pühler,  Jörn Kalinowski, and  Folker Meyer.

Comparing expression level-dependent features in codon usage with protein abundance: an analysis of ‘predictive proteomics’.


  Proteomics.
  


2004.







      
  BibTeX

  
      @article{mchardy_comparing_2004-1,
  title = {Comparing expression level-dependent features in codon usage with protein abundance: an analysis of ‘predictive proteomics’},
  volume = {4},
  journal = {Proteomics},
  author = {McHardy, Alice C and Pühler, Alfred and Kalinowski, Jörn and Meyer, Folker},
  year = {2004},
  note = {Publisher: WILEY-VCH Verlag Weinheim}
}

      

      



      5. 

    5. 




 H. Kuster,  N. Hohnjec,  F. Krajinski,  F. El Yahyaoui,  K. Manthey,  J. Gouzy,  M. Dondrup,  Folker Meyer,  J. Kalinowski,  L. Brechenmacher,  D. van Tuinen,  V. Gianinazzi-Pearson,  A. Puhler,  P. Gamas, and  A. Becker.

Construction and validation of cDNA-based Mt6k-RIT macro- and microarrays to explore root endosymbioses in the model legume Medicago truncatula.


  Journal of Biotechnology.
  


2004.



  [doi]





      
  BibTeX

  
      @article{kuster_construction_2004-2,
  title = {Construction and validation of {cDNA}-based {Mt6k}-{RIT} macro- and microarrays to explore root endosymbioses in the model legume {Medicago} truncatula},
  volume = {108},
  doi = {10.1016/j.jbiotec.2003.11.011},
  journal = {Journal of Biotechnology},
  author = {Kuster, H. and Hohnjec, N. and Krajinski, F. and El Yahyaoui, F. and Manthey, K. and Gouzy, J. and Dondrup, M. and Meyer, Folker and Kalinowski, J. and Brechenmacher, L. and van Tuinen, D. and Gianinazzi-Pearson, V. and Puhler, A. and Gamas, P. and Becker, A.},
  year = {2004},
  note = {Type: Journal Article}
}

      

      



    

    2003
    

    1. 




 A. Wilke,  C. Ruckert,  D. Bartels,  M. Dondrup,  A. Goesmann,  A. T. Huser,  S. Kespohl,  B. Linke,  M. Mahne,  A. McHardy,  A. Puhler, and  Folker Meyer.

Bioinformatics support for high-throughput proteomics.


  J Biotechnol.
  


2003.




[url]




      
  BibTeX

  
      @article{wilke_bioinformatics_2003,
  title = {Bioinformatics support for high-throughput proteomics},
  volume = {106},
  url = {https://www.ncbi.nlm.nih.gov/pubmed/14651857},
  journal = {J Biotechnol},
  author = {Wilke, A. and Ruckert, C. and Bartels, D. and Dondrup, M. and Goesmann, A. and Huser, A. T. and Kespohl, S. and Linke, B. and Mahne, M. and McHardy, A. and Puhler, A. and Meyer, Folker},
  year = {2003},
  note = {Type: Journal Article}
}

      

      



      2. 

    2. 




 F. J. Vorholter,  T. Thias,  Folker Meyer,  T. Bekel,  O. Kaiser,  A. Puhler, and  K. Niehaus.

Comparison of two Xanthomonas campestris pathovar campestris genomes revealed differences in their gene composition.


  J Biotechnol.
  


2003.




[url]




      
  BibTeX

  
      @article{vorholter_comparison_2003,
  title = {Comparison of two {Xanthomonas} campestris pathovar campestris genomes revealed differences in their gene composition},
  volume = {106},
  url = {http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=14651861},
  journal = {J Biotechnol},
  author = {Vorholter, F. J. and Thias, T. and Meyer, Folker and Bekel, T. and Kaiser, O. and Puhler, A. and Niehaus, K.},
  year = {2003},
  note = {Type: Journal Article}
}

      

      



      3. 

    3. 




 A. Tauch,  A. Schluter,  N. Bischoff,  A. Goesmann,  Folker Meyer, and  A. Puhler.

The 79,370-bp conjugative plasmid pB4 consists of an IncP-1beta backbone loaded with a chromate resistance transposon, the strA-strB streptomycin resistance gene pair, the oxacillinase gene bla(NPS-1), and a tripartite antibiotic efflux system of the resistance-nodulation-division family.


  Mol Genet Genomics.
  


2003.




[url]




      
  BibTeX

  
      @article{tauch_79370-bp_2003,
  title = {The 79,370-bp conjugative plasmid {pB4} consists of an {IncP}-1beta backbone loaded with a chromate resistance transposon, the {strA}-{strB} streptomycin resistance gene pair, the oxacillinase gene bla({NPS}-1), and a tripartite antibiotic efflux system of the resistance-nodulation-division family},
  volume = {268},
  url = {http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=12589432},
  journal = {Mol Genet Genomics},
  author = {Tauch, A. and Schluter, A. and Bischoff, N. and Goesmann, A. and Meyer, Folker and Puhler, A.},
  year = {2003},
  note = {Type: Journal Article}
}

      

      



      4. 

    4. 




 S. Ruberg,  Z. X. Tian,  E. Krol,  B. Linke,  Folker Meyer,  Y. P. Wang,  A. Puhler,  S. Weidner, and  A. Becker.

Construction and validation of a Sinorhizobium meliloti whole genome DNA microarray: genome-wide profiling of osmoadaptive gene expression.


  Journal of Biotechnology.
  


2003.



  [doi]





      
  BibTeX

  
      @article{ruberg_construction_2003,
  title = {Construction and validation of a {Sinorhizobium} meliloti whole genome {DNA} microarray: genome-wide profiling of osmoadaptive gene expression},
  volume = {106},
  doi = {10.1016/j.jbiotec.2003.08.005},
  journal = {Journal of Biotechnology},
  author = {Ruberg, S. and Tian, Z. X. and Krol, E. and Linke, B. and Meyer, Folker and Wang, Y. P. and Puhler, A. and Weidner, S. and Becker, A.},
  year = {2003},
  note = {Type: Journal Article}
}

      

      



      5. 

    5. 




 O. Nyamsuren,  F. Colditz,  S. Rosendahl,  M. Tamasloukht,  T. Bekel,  Folker Meyer,  H. Kuester,  P. Franken, and  F. Krajinski.

Transcriptional profiling of Medicago truncatula roots after infection with Aphanomyces euteiches (oomycota) identifies novel genes upregulated during this pathogenic interaction.


  Physiological and Molecular Plant Pathology.
  


2003.



  [doi]





      
  BibTeX

  
      @article{nyamsuren_transcriptional_2003,
  title = {Transcriptional profiling of {Medicago} truncatula roots after infection with {Aphanomyces} euteiches (oomycota) identifies novel genes upregulated during this pathogenic interaction},
  volume = {63},
  doi = {10.1016/j.pmpp.2003.09.001},
  journal = {Physiological and Molecular Plant Pathology},
  author = {Nyamsuren, O. and Colditz, F. and Rosendahl, S. and Tamasloukht, M. and Bekel, T. and Meyer, Folker and Kuester, H. and Franken, P. and Krajinski, F.},
  year = {2003},
  note = {Type: Journal Article}
}

      

      



      6. 

    6. 




 Folker Meyer,  A. Goesmann,  A. C. McHardy,  D. Bartels,  T. Bekel,  J. Clausen,  J. Kalinowski,  B. Linke,  O. Rupp,  R. Giegerich, and  A. Puhler.

GenDB - an open source genome annotation system for prokaryote genomes.


  Nucleic Acids Research.
  


2003.



  [doi]





      
  BibTeX

  
      @article{meyer_gendb_2003,
  title = {{GenDB} - an open source genome annotation system for prokaryote genomes},
  volume = {31},
  doi = {10.1093/nar/gkg312},
  journal = {Nucleic Acids Research},
  author = {Meyer, Folker and Goesmann, A. and McHardy, A. C. and Bartels, D. and Bekel, T. and Clausen, J. and Kalinowski, J. and Linke, B. and Rupp, O. and Giegerich, R. and Puhler, A.},
  year = {2003},
  note = {Type: Journal Article}
}

      

      



      7. 

    7. 




 J. Kalinowski,  B. Bathe,  D. Bartels,  N. Bischoff,  M. Bott,  A. Burkovski,  N. Dusch,  L. Eggeling,  B. J. Eikmanns,  L. Gaigalat,  A. Goesmann,  M. Hartmann,  K. Huthmacher,  R. Kramer,  B. Linke,  A. C. McHardy,  Folker Meyer,  B. Mockel,  W. Pfefferle,  A. Puhler,  D. A. Rey,  C. Ruckert,  O. Rupp,  H. Sahm,  V. F. Wendisch,  I. Wiegrabe, and  A. Tauch.

The complete Corynebacterium glutamicum ATCC 13032 genome sequence and its impact on the production of L-aspartate-derived amino acids and vitamins.


  J Biotechnol.
  


2003.




[url]




      
  BibTeX

  
      @article{kalinowski_complete_2003,
  title = {The complete {Corynebacterium} glutamicum {ATCC} 13032 genome sequence and its impact on the production of {L}-aspartate-derived amino acids and vitamins},
  volume = {104},
  url = {http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=12948626},
  journal = {J Biotechnol},
  author = {Kalinowski, J. and Bathe, B. and Bartels, D. and Bischoff, N. and Bott, M. and Burkovski, A. and Dusch, N. and Eggeling, L. and Eikmanns, B. J. and Gaigalat, L. and Goesmann, A. and Hartmann, M. and Huthmacher, K. and Kramer, R. and Linke, B. and McHardy, A. C. and Meyer, Folker and Mockel, B. and Pfefferle, W. and Puhler, A. and Rey, D. A. and Ruckert, C. and Rupp, O. and Sahm, H. and Wendisch, V. F. and Wiegrabe, I. and Tauch, A.},
  year = {2003},
  note = {Type: Journal Article}
}

      

      



      8. 

    8. 




 O. Kaiser,  D. Bartels,  T. Bekel,  A. Goesmann,  S. Kespohl,  A. Puhler, and  Folker Meyer.

Whole genome shotgun sequencing guided by bioinformatics pipelines–an optimized approach for an established technique.


  J Biotechnol.
  


2003.




[url]




      
  BibTeX

  
      @article{kaiser_whole_2003,
  title = {Whole genome shotgun sequencing guided by bioinformatics pipelines–an optimized approach for an established technique},
  volume = {106},
  url = {http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=14651855},
  journal = {J Biotechnol},
  author = {Kaiser, O. and Bartels, D. and Bekel, T. and Goesmann, A. and Kespohl, S. and Puhler, A. and Meyer, Folker},
  year = {2003},
  note = {Type: Journal Article}
}

      

      



      9. 

    9. 




 M. Dondrup,  A. Goesmann,  D. Bartels,  J. Kalinowski,  L. Krause,  B. Linke,  O. Rupp,  A. Sczyrba,  A. Puhler, and  Folker Meyer.

EMMA: a platform for consistent storage and efficient analysis of microarray data.


  Journal of Biotechnology.
  


2003.



  [doi]





      
  BibTeX

  
      @article{dondrup_emma_2003,
  title = {{EMMA}: a platform for consistent storage and efficient analysis of microarray data},
  volume = {106},
  doi = {10.1016/j.jbiotec.2003.08.010},
  journal = {Journal of Biotechnology},
  author = {Dondrup, M. and Goesmann, A. and Bartels, D. and Kalinowski, J. and Krause, L. and Linke, B. and Rupp, O. and Sczyrba, A. and Puhler, A. and Meyer, Folker},
  year = {2003},
  note = {Type: Journal Article}
}

      

      



      10. 

    10. 




 C. Baar,  M. Eppinger,  G. Raddatz,  J. Simon,  C. Lanz,  O. Klimmek,  R. Nandakumar,  R. Gross,  A. Rosinus,  H. Keller,  P. Jagtap,  B. Linke,  Folker Meyer,  H. Lederer, and  S. C. Schuster.

Complete genome sequence and analysis of Wolinella succinogenes.


  Proceedings of the National Academy of Sciences of the United States of America.
  


2003.



  [doi]





      
  BibTeX

  
      @article{baar_complete_2003,
  title = {Complete genome sequence and analysis of {Wolinella} succinogenes},
  volume = {100},
  doi = {10.1073/pnas.1932838100},
  journal = {Proceedings of the National Academy of Sciences of the United States of America},
  author = {Baar, C. and Eppinger, M. and Raddatz, G. and Simon, J. and Lanz, C. and Klimmek, O. and Nandakumar, R. and Gross, R. and Rosinus, A. and Keller, H. and Jagtap, P. and Linke, B. and Meyer, Folker and Lederer, H. and Schuster, S. C.},
  year = {2003},
  note = {Type: Journal Article}
}

      

      



      11. 

    11. 




 Anne Wulf,  Katja Manthey,  Jasmin Doll,  Andreas M Perlick,  Burkhard Linke,  Thomas Bekel,  Folker Meyer,  Philipp Franken,  Helge Küster, and  Franziska Krajinski.

Transcriptional changes in response to arbuscular mycorrhiza development in the model plant Medicago truncatula.


  Molecular Plant-Microbe Interactions.
  


2003.







      
  BibTeX

  
      @article{wulf_transcriptional_2003-2,
  title = {Transcriptional changes in response to arbuscular mycorrhiza development in the model plant {Medicago} truncatula},
  volume = {16},
  journal = {Molecular Plant-Microbe Interactions},
  author = {Wulf, Anne and Manthey, Katja and Doll, Jasmin and Perlick, Andreas M and Linke, Burkhard and Bekel, Thomas and Meyer, Folker and Franken, Philipp and Küster, Helge and Krajinski, Franziska},
  year = {2003},
  note = {Publisher: The American Phytopathological Society}
}

      

      



      12. 

    12. 




 Andreas Tauch,  Andreas Schlüter,  N Bischoff,  Alexander Goesmann,  F Meyer, and  Alfred Pühler.

The 79,370-bp conjugative plasmid pB4 consists of an IncP-1β backbone loaded with a chromate resistance transposon, the strA-strB streptomycin resistance gene pair, the oxacillinase gene bla NPS-1, and a tripartite antibiotic efflux system of the resistance-nodulation-division family.


  Molecular Genetics and Genomics.
  


2003.







      
  BibTeX

  
      @article{tauch_79370-bp_2003-1,
  title = {The 79,370-bp conjugative plasmid {pB4} consists of an {IncP}-1β backbone loaded with a chromate resistance transposon, the {strA}-{strB} streptomycin resistance gene pair, the oxacillinase gene bla {NPS}-1, and a tripartite antibiotic efflux system of the resistance-nodulation-division family},
  volume = {268},
  journal = {Molecular Genetics and Genomics},
  author = {Tauch, Andreas and Schlüter, Andreas and Bischoff, N and Goesmann, Alexander and Meyer, F and Pühler, Alfred},
  year = {2003},
  note = {Publisher: Springer-Verlag}
}

      

      



      13. 

    13. 




 Alexander Goesmann,  Burkhard Linke,  Oliver Rupp,  Lutz Krause,  Daniela Bartels,  Michael Dondrup,  Alice C McHardy,  Andreas Wilke,  Alfred Pühler, and  Folker Meyer.

Building a BRIDGE for the integration of heterogeneous data from functional genomics into a platform for systems biology.


  Journal of biotechnology.
  


2003.







      
  BibTeX

  
      @article{goesmann_building_2003-1,
  title = {Building a {BRIDGE} for the integration of heterogeneous data from functional genomics into a platform for systems biology},
  volume = {106},
  journal = {Journal of biotechnology},
  author = {Goesmann, Alexander and Linke, Burkhard and Rupp, Oliver and Krause, Lutz and Bartels, Daniela and Dondrup, Michael and McHardy, Alice C and Wilke, Andreas and Pühler, Alfred and Meyer, Folker},
  year = {2003},
  note = {Publisher: Elsevier}
}

      

      



      14. 

    14. 




 Olaf Kaiser,  Daniela Bartels,  Thomas Bekel,  Alexander Goesmann,  Sebastian Kespohl,  Alfred Pühler, and  Folker Meyer.

Whole genome shotgun sequencing guided by bioinformatics pipelines—an optimized approach for an established technique.


  Journal of biotechnology.
  


2003.







      
  BibTeX

  
      @article{kaiser_whole_2003-1,
  title = {Whole genome shotgun sequencing guided by bioinformatics pipelines—an optimized approach for an established technique},
  volume = {106},
  journal = {Journal of biotechnology},
  author = {Kaiser, Olaf and Bartels, Daniela and Bekel, Thomas and Goesmann, Alexander and Kespohl, Sebastian and Pühler, Alfred and Meyer, Folker},
  year = {2003},
  note = {Publisher: Elsevier}
}

      

      



      15. 

    15. 




 M Dondrup,  A Goesmann,  D Bartels,  J Kalinowski,  L Krause,  B Linke,  O Rupp,  A Sczyrba,  A Pühler, and  Folker Meyer.

Archer, DA, see Punt, PJ (106) 23.


  Journal of Biotechnology.
  


2003.







      
  BibTeX

  
      @article{dondrup_archer_2003,
  title = {Archer, {DA}, see {Punt}, {PJ} (106) 23},
  volume = {106},
  journal = {Journal of Biotechnology},
  author = {Dondrup, M and Goesmann, A and Bartels, D and Kalinowski, J and Krause, L and Linke, B and Rupp, O and Sczyrba, A and Pühler, A and Meyer, Folker},
  year = {2003}
}

      

      



      16. 

    16. 




 Jörn Kalinowski,  Brigitte Bathe,  Daniela Bartels,  Nicole Bischoff,  Michael Bott,  Andreas Burkovski,  Nicole Dusch,  Lothar Eggeling,  Bernhard J Eikmanns,  Lars Gaigalat, and  Folker Meyer.

The complete Corynebacterium glutamicum ATCC 13032 genome sequence and its impact on the production of l-aspartate-derived amino acids and vitamins.


  Journal of Biotechnology.
  


2003.







      
  BibTeX

  
      @article{kalinowski_complete_2004,
  title = {The complete {Corynebacterium} glutamicum {ATCC} 13032 genome sequence and its impact on the production of l-aspartate-derived amino acids and vitamins},
  volume = {104},
  journal = {Journal of Biotechnology},
  author = {Kalinowski, Jörn and Bathe, Brigitte and Bartels, Daniela and Bischoff, Nicole and Bott, Michael and Burkovski, Andreas and Dusch, Nicole and Eggeling, Lothar and Eikmanns, Bernhard J and Gaigalat, Lars and Meyer, Folker},
  year = {2003}
}

      

      



    

    2002
    

    1. 




 A. Goesmann,  M. Haubrock,  Folker Meyer,  J. Kalinowski, and  R. Giegerich.

PathFinder: reconstruction and dynamic visualization of metabolic pathways.


  Bioinformatics.
  


2002.




[url]




      
  BibTeX

  
      @article{goesmann_pathfinder_2002,
  title = {{PathFinder}: reconstruction and dynamic visualization of metabolic pathways},
  volume = {18},
  url = {http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=11836220},
  journal = {Bioinformatics},
  author = {Goesmann, A. and Haubrock, M. and Meyer, Folker and Kalinowski, J. and Giegerich, R.},
  year = {2002},
  note = {Type: Journal Article}
}

      

      



    

    2001
    

    1. 




 Folker Meyer.

GENDB: a second generation genome annotation system.



2001.







      
  BibTeX

  
      @article{meyer_gendb_2001,
  title = {{GENDB}: a second generation genome annotation system},
  author = {Meyer, Folker},
  year = {2001}
}

      

      



    

    1998
    

    1. 




 J. Stoye,  D. Evers, and  Folker Meyer.

Rose: generating sequence families.


  Bioinformatics.
  


1998.




[url]




      
  BibTeX

  
      @article{stoye_rose_1998,
  title = {Rose: generating sequence families},
  volume = {14},
  url = {http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=9545448},
  journal = {Bioinformatics},
  author = {Stoye, J. and Evers, D. and Meyer, Folker},
  year = {1998},
  note = {Type: Journal Article}
}

      

      



      2. 

    2. 




 Jens Stoye,  Dirk Evers, and  Folker Meyer.

Rose: generating sequence families..


  Bioinformatics (Oxford, England).
  


1998.







      
  BibTeX

  
      @article{stoye_rose_1998-2,
  title = {Rose: generating sequence families.},
  volume = {14},
  journal = {Bioinformatics (Oxford, England)},
  author = {Stoye, Jens and Evers, Dirk and Meyer, Folker},
  year = {1998}
}

      

      



    

    1997
    

    1. 




 Jens Stoye,  Dirk Evers, and  Folker Meyer.

Generating Benchmarks for Multiple Sequence Alignments and Phylogenic Reconstructions..


  Ismb.
  


1997.







      
  BibTeX

  
      @inproceedings{stoye_generating_1997-1,
  title = {Generating {Benchmarks} for {Multiple} {Sequence} {Alignments} and {Phylogenic} {Reconstructions}.},
  booktitle = {Ismb},
  author = {Stoye, Jens and Evers, Dirk and Meyer, Folker},
  year = {1997}
}

      

      



    

    1996
    

    1. 




 R. Giegerich,  Folker Meyer, and  C. Schleiermacher.

GeneFisher–software support for the detection of postulated genes.


  Proc Int Conf Intell Syst Mol Biol.
  


1996.




[url]




      
  BibTeX

  
      @article{giegerich_genefishersoftware_1996,
  title = {{GeneFisher}–software support for the detection of postulated genes},
  volume = {4},
  url = {http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=8877506},
  journal = {Proc Int Conf Intell Syst Mol Biol},
  author = {Giegerich, R. and Meyer, Folker and Schleiermacher, C.},
  year = {1996},
  note = {Type: Journal Article}
}

      

      



      2. 

    2. 




 Robert Giegerich,  Folker Meyer, and  Chris Schleiermacher.

GeneFisher-software support for the detection of postulated genes..


  ISMB.
  


1996.







      
  BibTeX

  
      @inproceedings{giegerich_genefisher-software_1996,
  title = {{GeneFisher}-software support for the detection of postulated genes.},
  volume = {4},
  booktitle = {{ISMB}},
  author = {Giegerich, Robert and Meyer, Folker and Schleiermacher, Chris},
  year = {1996}
}